View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1022_low_1 (Length: 510)

Name: NF1022_low_1
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1022_low_1
NF1022_low_1
[»] scaffold0498 (1 HSPs)
scaffold0498 (400-510)||(11875-11985)
[»] chr7 (6 HSPs)
chr7 (400-510)||(11509990-11510100)
chr7 (400-510)||(18148978-18149089)
chr7 (400-476)||(34705525-34705601)
chr7 (447-510)||(22530365-22530428)
chr7 (327-404)||(22535348-22535425)
chr7 (424-490)||(21860806-21860872)
[»] chr4 (9 HSPs)
chr4 (400-510)||(15703289-15703399)
chr4 (400-501)||(23972692-23972793)
chr4 (400-510)||(14644470-14644581)
chr4 (400-510)||(11150174-11150284)
chr4 (400-488)||(19613287-19613375)
chr4 (398-510)||(25127532-25127651)
chr4 (426-494)||(18874736-18874804)
chr4 (406-494)||(4529645-4529731)
chr4 (406-494)||(13885416-13885501)
[»] chr3 (8 HSPs)
chr3 (400-510)||(3473156-3473266)
chr3 (400-510)||(39729006-39729117)
chr3 (400-508)||(18539468-18539576)
chr3 (400-510)||(15778646-15778757)
chr3 (406-494)||(19595579-19595665)
chr3 (406-466)||(3413897-3413956)
chr3 (431-482)||(18694944-18694995)
chr3 (431-482)||(18710463-18710514)
[»] chr8 (4 HSPs)
chr8 (400-510)||(4860665-4860774)
chr8 (400-506)||(9882096-9882202)
chr8 (400-510)||(40387361-40387471)
chr8 (403-455)||(17289350-17289402)
[»] chr2 (8 HSPs)
chr2 (400-510)||(34892043-34892153)
chr2 (409-510)||(16933138-16933239)
chr2 (400-488)||(16092094-16092181)
chr2 (400-488)||(20265045-20265133)
chr2 (404-455)||(24851751-24851802)
chr2 (408-510)||(22385348-22385449)
chr2 (424-482)||(20178492-20178550)
chr2 (431-485)||(32625721-32625775)
[»] chr1 (7 HSPs)
chr1 (400-509)||(12784855-12784965)
chr1 (406-510)||(52272509-52272611)
chr1 (400-510)||(23633592-23633703)
chr1 (400-469)||(29447135-29447204)
chr1 (400-488)||(41138359-41138447)
chr1 (430-485)||(18515086-18515141)
chr1 (436-485)||(89769-89818)
[»] scaffold0005 (1 HSPs)
scaffold0005 (400-510)||(172711-172822)
[»] chr6 (5 HSPs)
chr6 (400-510)||(19770368-19770479)
chr6 (410-494)||(9547493-9547577)
chr6 (424-494)||(22468641-22468711)
chr6 (400-455)||(19565551-19565606)
chr6 (404-452)||(19568183-19568233)
[»] scaffold0281 (1 HSPs)
scaffold0281 (400-510)||(427-537)
[»] scaffold0103 (1 HSPs)
scaffold0103 (409-510)||(17037-17138)
[»] scaffold0024 (2 HSPs)
scaffold0024 (400-495)||(106542-106637)
scaffold0024 (400-450)||(108909-108958)
[»] chr5 (3 HSPs)
chr5 (400-488)||(32039497-32039585)
chr5 (400-506)||(39437315-39437424)
chr5 (414-510)||(29497411-29497506)
[»] scaffold0043 (1 HSPs)
scaffold0043 (409-510)||(67126-67226)
[»] scaffold0048 (1 HSPs)
scaffold0048 (432-468)||(69384-69420)


Alignment Details
Target: scaffold0498 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 400 - 510
Target Start/End: Original strand, 11875 - 11985
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
11875 taaaatttcatttaataaaaatcaaataggcatcaatcaacgtcttataataacatataagcatcaacaacatttaagaatatcaagtagacattaataa 11974  T
500 aatacaaatca 510  Q
    |||||||||||    
11975 aatacaaatca 11985  T

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Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 11510100 - 11509990
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
11510100 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagcatcaataacatttaagaatatcaagtagacattaataa 11510001  T
500 aatacaaatca 510  Q
    |||||||||||    
11510000 aatacaaatca 11509990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 18149089 - 18148978
Alignment:
400 taaaatttcatttaataaaaa-tcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaata 498  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
18149089 taaaatttcatttaataaaaaatcaaataggcatcaattatcatcttataataacatataagcatcaacaacatttaagaatatcaagtagacattaata 18148990  T
499 aaatacaaatca 510  Q
    ||||||||||||    
18148989 aaatacaaatca 18148978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 476
Target Start/End: Original strand, 34705525 - 34705601
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaa 476  Q
    |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
34705525 taaaatttcatttagtaaaaatcaaataggcgtcaatcaacatcttgtaataacatataagtatcaacaacatttaa 34705601  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 22530428 - 22530365
Alignment:
447 taataacatataagaatcaacaacatttaagaatatcaagtagacattaataaaatacaaatca 510  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22530428 taataacttataagaatcaacaacatttaagaatatcaagtagacattaataaaatacaaatca 22530365  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 22535425 - 22535348
Alignment:
327 attgaaagcttacaaatgggtgtgggaaagtcatatcacatccaagattgcagtgttttcttggcgtttgctttaaaa 404  Q
    |||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||    
22535425 attgaaagcttacaaaagggtgtgggaaaatcttatcccatccaagattgcagtgttttcttggcgtttgcttcaaaa 22535348  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 21860872 - 21860806
Alignment:
424 aataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtaga 490  Q
    |||||||| ||||||||||||||| || |||| |||  |||||||||||||| ||||||||||||||    
21860872 aataggcaccaatcaacatcttatgatgacatgtaaacatcaacaacatttacgaatatcaagtaga 21860806  T

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Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 400 - 510
Target Start/End: Original strand, 15703289 - 15703399
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
15703289 taaaatttcatttaataaaaatcaaataggtatcaatcaacatcttataataacatataagcatcaacaacatttaagaatatcaagtagacattaataa 15703388  T
500 aatacaaatca 510  Q
    |||||||||||    
15703389 aatacaaatca 15703399  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 400 - 501
Target Start/End: Original strand, 23972692 - 23972793
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
23972692 taaaatttcatttaataaaaatcaaataggtatcaatcaacatctcataataacatataagcatcaacaacatttaagaatatcaagtagacattaataa 23972791  T
500 aa 501  Q
    ||    
23972792 aa 23972793  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 400 - 510
Target Start/End: Original strand, 14644470 - 14644581
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacatt-aata 498  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |    
14644470 taaaatttcatttaaaaaaaatcaaatagacatcaatcaacatcttataataacatataagcatcaacaacatttaagaatatcaagtagacattaaaaa 14644569  T
499 aaatacaaatca 510  Q
    ||||||||||||    
14644570 aaatacaaatca 14644581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 400 - 510
Target Start/End: Original strand, 11150174 - 11150284
Alignment:
400 taaaatttcatttaataaaa-atcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaata 498  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||| || |||||||||||||||||||||||||||||  ||| |    
11150174 taaaatttcatttaataaaacatcaaataggcatcaatcaacatctattaataacatatacga-tcaacaacatttaagaatatcaagtagacgctaaga 11150272  T
499 aaatacaaatca 510  Q
    ||||||||||||    
11150273 aaatacaaatca 11150284  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 400 - 488
Target Start/End: Complemental strand, 19613375 - 19613287
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagta 488  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||    
19613375 taaagtttcatttaataaaaatcaaataggcatcaaccaacatcttataataacatataagcatcgagaacatttaagaatatcaagta 19613287  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 398 - 510
Target Start/End: Complemental strand, 25127651 - 25127532
Alignment:
398 tttaaaatttcatttaataaaaat-----caaataggcatcaatcaacatcttata--ataacatataagaatcaacaacatttaagaatatcaagtaga 490  Q
    |||||||||||||||||||||||      ||||||| |||||||||||||||||||  ||| |||||||  ||||||||||||||||||||| |||||||    
25127651 tttaaaatttcatttaataaaaaaaaaaacaaatagacatcaatcaacatcttatataatagcatataaccatcaacaacatttaagaatattaagtaga 25127552  T
491 cattaataaaatacaaatca 510  Q
    ||||| ||||||||||||||    
25127551 cattagtaaaatacaaatca 25127532  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 494
Target Start/End: Original strand, 18874736 - 18874804
Alignment:
426 taggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacatt 494  Q
    ||||||||||||||||||||||| || ||| |||| || |||| |||||||||||||||||||||||||    
18874736 taggcatcaatcaacatcttatattagcatgtaagcattaacaccatttaagaatatcaagtagacatt 18874804  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 494
Target Start/End: Original strand, 4529645 - 4529731
Alignment:
406 ttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacatt 494  Q
    |||||||||||||| |||| || |||| ||| |||||||||||||||||| |||| ||||||| || ||||||||||||||||| ||||    
4529645 ttcatttaataaaa-tcaa-tatgcattaattaacatcttataataacatgtaagtatcaacatcaattaagaatatcaagtaggcatt 4529731  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 494
Target Start/End: Complemental strand, 13885501 - 13885416
Alignment:
406 ttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacatt 494  Q
    |||||||||||||| |||| ||||||| |||||||||||||| |||||||| ||| |||||||  ||||||| |||||||||| |||||    
13885501 ttcatttaataaaa-tcaa-taggcattaatcaacatcttat-ataacatacaagtatcaacactatttaagtatatcaagtatacatt 13885416  T

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Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 3473266 - 3473156
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
3473266 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataagatataagcatcaacaacatttaagaatatcaagtagacattaataa 3473167  T
500 aatacaaatca 510  Q
    |||||||||||    
3473166 aatacaaatca 3473156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 39729117 - 39729006
Alignment:
400 taaaatttcatttaataaaaa-tcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaata 498  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
39729117 taaaatttcatttaataaaaaatcaaataggcatcaatcaacatcttataagaacatataagcatcaacaacatttaagaatatcaagtagacattaata 39729018  T
499 aaatacaaatca 510  Q
    ||||||||||||    
39729017 aaatacaaatca 39729006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 400 - 508
Target Start/End: Complemental strand, 18539576 - 18539468
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||    
18539576 taaaatttcacttaataaaaatcaaataggcgtcaatcaacatcttataatgacatataagcatcaacaacatttaagaatatcaagtagacattagtaa 18539477  T
500 aatacaaat 508  Q
    |||||||||    
18539476 aatacaaat 18539468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 15778757 - 15778646
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagaca-ttaata 498  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||  || |||| |    
15778757 taaagtttcatttaataaaaatcaaataggaatcaaccaacatcttataataacatataagcatcgagaacatttaagaatatcaagtaaccacttaaaa 15778658  T
499 aaatacaaatca 510  Q
    ||||||||||||    
15778657 aaatacaaatca 15778646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 494
Target Start/End: Original strand, 19595579 - 19595665
Alignment:
406 ttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacatt 494  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||| || ||| |||| |||||||||| |||||    
19595579 ttcatttaataaaaatcaa-taggcatcaatcaacatcttat-ataacatacaagtatcatcaccatctaagtatatcaagtacacatt 19595665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 3413956 - 3413897
Alignment:
406 ttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaa 466  Q
    ||||||||||||||||||| |||||||||||||| || ||| ||||||||||||| |||||    
3413956 ttcatttaataaaaatcaa-taggcatcaatcaatatattacaataacatataagcatcaa 3413897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 18694995 - 18694944
Alignment:
431 atcaatcaacatcttataataacatataagaatcaacaacatttaagaatat 482  Q
    |||| |||||||| ||||||||||| | || |||||||||||||||||||||    
18694995 atcagtcaacatcctataataacatgtgagcatcaacaacatttaagaatat 18694944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 18710514 - 18710463
Alignment:
431 atcaatcaacatcttataataacatataagaatcaacaacatttaagaatat 482  Q
    |||| |||||||| ||||||||||| | || |||||||||||||||||||||    
18710514 atcagtcaacatcctataataacatgtgagcatcaacaacatttaagaatat 18710463  T

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Target: chr8 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 4860774 - 4860665
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
4860774 taaaatttcatttaataaaaatcaaataggcatcaatcaatat-ttatagtaacatataagcatcaacaacatttaagaatatcaagtagacattaataa 4860676  T
500 aatacaaatca 510  Q
    |||||||||||    
4860675 aatacaaatca 4860665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 400 - 506
Target Start/End: Original strand, 9882096 - 9882202
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
9882096 taaaatttcatttaataaaaatcaaataggaatcaatcaacatctcataataacatataagcatcaacaacatttaagaatatcaagtagatattaataa 9882195  T
500 aatacaa 506  Q
    |||||||    
9882196 aatacaa 9882202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 400 - 510
Target Start/End: Original strand, 40387361 - 40387471
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||    
40387361 taaaattttatttaataaaaatcaaataggcatcaatcaacatcttataataacatataaacatcaacaacatttaagaatatcaattagatattaataa 40387460  T
500 aatacaaatca 510  Q
    |||||||||||    
40387461 aatacaaatca 40387471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 17289350 - 17289402
Alignment:
403 aatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacat 455  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||    
17289350 aatttaatttagtaaaaatctaataggcatcaatcaacatcttataataacat 17289402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 400 - 510
Target Start/End: Original strand, 34892043 - 34892153
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
34892043 taaaatttcctttaataaaaatcaaataggcatcaatcaaaatcatataataacatataagcatcaacaacatttaagaatgtcaagtagacattaataa 34892142  T
500 aatacaaatca 510  Q
    |||||||||||    
34892143 aatacaaatca 34892153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 409 - 510
Target Start/End: Complemental strand, 16933239 - 16933138
Alignment:
409 atttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagaca-ttaataaaatacaaa 507  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||| ||| |||||||||||    
16933239 atttaataaaaatcaa-taggcatcaatcgacatcttataataacatataaacgtcaacaacatttaagaatatcaagtagacatttagtaaaatacaaa 16933141  T
508 tca 510  Q
    |||    
16933140 tca 16933138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 16092094 - 16092181
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagta 488  Q
    |||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||    
16092094 taaagtttgatttaataaaa-tcaaataggcatcaaccaacatcttataataacatataagcatcgagaacatttaagaatatcaagta 16092181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 400 - 488
Target Start/End: Complemental strand, 20265133 - 20265045
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagta 488  Q
    |||| |||||||||||||||||| ||||| ||||||  ||||||| ||||||||||||||| ||| | |||||||||||||||||||||    
20265133 taaagtttcatttaataaaaatcgaatagacatcaactaacatctcataataacatataagcatcgataacatttaagaatatcaagta 20265045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 24851802 - 24851751
Alignment:
404 atttcatttaataaaaatcaaataggcatcaatcaacatcttataataacat 455  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
24851802 atttcatttaataaaaatcaaatagacatcaatcaacatcttataataacat 24851751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 510
Target Start/End: Original strand, 22385348 - 22385449
Alignment:
408 catttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataaaatacaaa 507  Q
    ||||||||||||||||  ||  || ||||||||||||||||||||||  |||| || |||| ||||| |||||||||||||||||||| ||||||||| |    
22385348 catttaataaaaatcag-taaacaacaatcaacatcttataataacaactaagcattaacatcatttcagaatatcaagtagacattagtaaaatacaga 22385446  T
508 tca 510  Q
    |||    
22385447 tca 22385449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 20178492 - 20178550
Alignment:
424 aataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatat 482  Q
    ||||||||||||||||||||||| ||| |||  |||| |||||||||||||||||||||    
20178492 aataggcatcaatcaacatcttaaaatgacaggtaagcatcaacaacatttaagaatat 20178550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 32625775 - 32625721
Alignment:
431 atcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaa 485  Q
    |||| ||||||||||||||||| || | || ||||||||||||||||||||||||    
32625775 atcagtcaacatcttataataatatgtgagcatcaacaacatttaagaatatcaa 32625721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 400 - 509
Target Start/End: Original strand, 12784855 - 12784965
Alignment:
400 taaaatttcatttaataaaa-atcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaata 498  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
12784855 taaaatatcatttaataaaaaatcaaataggcatcaatcaacatcttataataacatataagcatcaacaacatttaagaatatcaagtagacattaata 12784954  T
499 aaatacaaatc 509  Q
    |||| ||||||    
12784955 aaatgcaaatc 12784965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 406 - 510
Target Start/End: Original strand, 52272509 - 52272611
Alignment:
406 ttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataaaataca 505  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||    
52272509 ttcatttaataaaaatcaa-taggcatcaatcaacatcttata-taacatacaagtatcaacaacatttaagaatatcaagtaggcattagtaaaataca 52272606  T
506 aatca 510  Q
    |||||    
52272607 aatca 52272611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 23633703 - 23633592
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagaca-ttaata 498  Q
    |||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||  || ||| ||    
23633703 taaagtttcatttaataaaagtcaaataagcatcaaccaacatcttataataacatataagcatcgagaacatttaagaatatcaagtaaccacttagta 23633604  T
499 aaatacaaatca 510  Q
    ||||||||||||    
23633603 aaatacaaatca 23633592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 29447204 - 29447135
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaa 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||    
29447204 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatgtgagcatcaacaa 29447135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 400 - 488
Target Start/End: Complemental strand, 41138447 - 41138359
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagta 488  Q
    |||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||| |||||||||||||||||    
41138447 taaagtttaatttaataaaaatcaaataggcatcaaccaacattttataataacatataagcatcgagaacttttaagaatatcaagta 41138359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 485
Target Start/End: Complemental strand, 18515141 - 18515086
Alignment:
430 catcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaa 485  Q
    ||||| |||||||||||||||||||| | || ||||||||||||||||||||||||    
18515141 catcagtcaacatcttataataacatgtgagcatcaacaacatttaagaatatcaa 18515086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 485
Target Start/End: Original strand, 89769 - 89818
Alignment:
436 tcaacatcttataataacatataagaatcaacaacatttaagaatatcaa 485  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||||    
89769 tcaacatcttataataacatgtgagcatcaacaacatttaagaatatcaa 89818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 172822 - 172711
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacatt-aata 498  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |    
172822 taaaatttcatttaaaaaaaatcaaatagacatcaatcaacatcttataataacatataagcatcaacaacatttaagaatatcaagtagacattaaaaa 172723  T
499 aaatacaaatca 510  Q
    ||||||||||||    
172722 aaatacaaatca 172711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 400 - 510
Target Start/End: Complemental strand, 19770479 - 19770368
Alignment:
400 taaaatttcatttaataaaaa-tcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaata 498  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
19770479 taaaatttcatttaataaaaaatcaaatagacatcaattaacatcttataataacatataagcatcaacaacatttaagaatatcaagtagacattaata 19770380  T
499 aaatacaaatca 510  Q
    ||||| ||||||    
19770379 aaataaaaatca 19770368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 410 - 494
Target Start/End: Original strand, 9547493 - 9547577
Alignment:
410 tttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacatt 494  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||    
9547493 tttaataaaaataaaataggcattaatcaacatcttataataacatataagcatcaacaacatttaagtatatcaagtacacatt 9547577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 424 - 494
Target Start/End: Original strand, 22468641 - 22468711
Alignment:
424 aataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacatt 494  Q
    ||||||||  |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
22468641 aataggcagaaatcaacatcttataataacatgtaagcatcaacaacatttaagaatatcaaatagacatt 22468711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 455
Target Start/End: Complemental strand, 19565606 - 19565551
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacat 455  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
19565606 taaaatttcatttaataaaaatcaaataggtatgaatcaacatcttataataacat 19565551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 452
Target Start/End: Complemental strand, 19568233 - 19568183
Alignment:
404 atttcatttaataaaaatcaaata--ggcatcaatcaacatcttataataa 452  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||    
19568233 atttcatttaataaaaatcaaataggggtatcaatcaacatcttataataa 19568183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 400 - 510
Target Start/End: Original strand, 427 - 537
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataa 499  Q
    |||| ||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||| | ||||||||| |||    
427 taaagtttcatttaataaaaattaaatcggcatcaatcaacgtcttataatagcatataagcatcaacaacatttaagaatatcgactagacattagtaa 526  T
500 aatacaaatca 510  Q
    |||||||||||    
527 aatacaaatca 537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 409 - 510
Target Start/End: Original strand, 17037 - 17138
Alignment:
409 atttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagaca-ttaataaaatacaaa 507  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||| ||| |||||||||||    
17037 atttaataaaaatcaa-taggcatcaatcgacatcttataataacatataaacgtcaacaacatttaagaatatcaagtagacatttagtaaaatacaaa 17135  T
508 tca 510  Q
    |||    
17136 tca 17138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 106542 - 106637
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaat-caacaacatttaagaatatcaagtagacatta 495  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||  || || |||||||||||||||||||||||||    
106542 taaaatttcatttaataaaaatcaa-taggcatcaatcaacatcttataataacatataagcataaaaaaatatttaagaatatcaagtagacatta 106637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 108909 - 108958
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataat 450  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
108909 taaaatttcatttaataaaaatcaa-taggcatcaatcaacatcttataat 108958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 32039497 - 32039585
Alignment:
400 taaaatttcatttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagta 488  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||    
32039497 taaagtttcatttaataaaaatcaaataggaatcaaccaacatcttataataacatataagcatcgagaacatttaagaatatcaagta 32039585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 39437424 - 39437315
Alignment:
400 taaaatttcatttaataaaaa-tcaaataggcatcaatcaacatcttata--ataacatataagaatcaacaacatttaagaatatcaagtagacattaa 496  Q
    |||||||||| |||||||||| |||||  | |||||||||||||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||     
39437424 taaaatttcaattaataaaaaatcaaactgacatcaatcaacatcttatataatagcatataagcatcaacaacatttaagaatatcaagtagacattag 39437325  T
497 taaaatacaa 506  Q
    ||||||||||    
39437324 taaaatacaa 39437315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 510
Target Start/End: Complemental strand, 29497506 - 29497411
Alignment:
414 ataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagaca-ttaataaaatacaaatca 510  Q
    ||||||||||| || |||| |||||||||||||| | |||||| ||| ||||||| |||||||| |||||||||| ||| |||| |||||||| ||||    
29497506 ataaaaatcaa-tatgcatgaatcaacatcttat-acaacatacaagtatcaacaccatttaagtatatcaagtacacatttaaaaaaatacagatca 29497411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 409 - 510
Target Start/End: Complemental strand, 67226 - 67126
Alignment:
409 atttaataaaaatcaaataggcatcaatcaacatcttataataacatataagaatcaacaacatttaagaatatcaagtagacattaataaaatacaaat 508  Q
    |||||||||||||||| |||||| |||| ||| |||||||||||||| |||  ||||||| ||||| ||| |||||||||||||||| ||||||||| ||    
67226 atttaataaaaatcaa-taggcaccaattaacgtcttataataacatctaaacatcaacatcatttcagattatcaagtagacattagtaaaatacagat 67128  T
509 ca 510  Q
    ||    
67127 ca 67126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 468
Target Start/End: Complemental strand, 69420 - 69384
Alignment:
432 tcaatcaacatcttataataacatataagaatcaaca 468  Q
    |||||||||||||||||||||||| |||| |||||||    
69420 tcaatcaacatcttataataacatgtaagcatcaaca 69384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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