View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1022_low_12 (Length: 274)
Name: NF1022_low_12
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1022_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 44224649 - 44224865
Alignment:
| Q |
18 |
tccaataatatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga |
117 |
Q |
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| T |
44224649 |
tccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga |
44224748 |
T |
|
| Q |
118 |
taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224749 |
taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa |
44224848 |
T |
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| Q |
218 |
acaaagcaccggcataa |
234 |
Q |
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||||||||||||||||| |
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| T |
44224849 |
acaaagcaccggcataa |
44224865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 44212483 - 44212699
Alignment:
| Q |
18 |
tccaataatatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga |
117 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44212483 |
tccaataacatagtaggtaagaaacacccagagagaaacttccactaatgagacgggaatcttgagaatccatgaaggaatagcatatgcccatgaggga |
44212582 |
T |
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| Q |
118 |
taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa |
217 |
Q |
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| T |
44212583 |
taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa |
44212682 |
T |
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| Q |
218 |
acaaagcaccggcataa |
234 |
Q |
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| T |
44212683 |
acaaagcaccagcataa |
44212699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 44235459 - 44235675
Alignment:
| Q |
18 |
tccaataatatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga |
117 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44235459 |
tccaataacatagtaggtaagaaacacccatagagaaacttccactaatgagatgggaatcttgagaatccacgaaggaatagcatatgcccatgaggga |
44235558 |
T |
|
| Q |
118 |
taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactagtgtgaaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44235559 |
taaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttaccagtgtgaaaa |
44235658 |
T |
|
| Q |
218 |
acaaagcaccggcataa |
234 |
Q |
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|||||||||| |||||| |
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| T |
44235659 |
acaaagcaccagcataa |
44235675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 2885207 - 2885053
Alignment:
| Q |
73 |
ggaatcttgagaatccacgaaggaatagcatatgcccatgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatag |
172 |
Q |
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||||||||||| ||||| | ||| ||||||||||||||||| ||| |||| |||||||||| |||||||||| || ||||||||||||||||||||| | |
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| T |
2885207 |
ggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttgtagaaactaggaagcttagcaatggtcattg |
2885108 |
T |
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| Q |
173 |
aaatctcagacattccattaaacatcatcgttactagtgtgaaaaacaaagcacc |
227 |
Q |
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||| || | ||||||||||||||| ||| | |||| || |||||| |||||||| |
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| T |
2885107 |
aaagttcggccattccattaaacataatcataactactgcgaaaaataaagcacc |
2885053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 43 - 197
Target Start/End: Original strand, 2899294 - 2899448
Alignment:
| Q |
43 |
acccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgcccatgagggataaaatagaaggtctcgttgcttgt |
142 |
Q |
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||||||| || |||||||| |||| || ||||||||||| ||||| | ||| ||||||||||||||||| ||| |||| |||||||||| |||||||| |
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| T |
2899294 |
acccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttgt |
2899393 |
T |
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| Q |
143 |
agtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacat |
197 |
Q |
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|| || ||||||||| ||||||||||| |||| |||| || |||||||||||| |
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| T |
2899394 |
agaaactaggaagcttcgcaatggtcattgaaagttcagccaatccattaaacat |
2899448 |
T |
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