View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1022_low_13 (Length: 264)
Name: NF1022_low_13
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1022_low_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 162 - 264
Target Start/End: Complemental strand, 6701764 - 6701662
Alignment:
| Q |
162 |
tttcatcaatggcgcttcggaaactctttacaatgcgtcttttcgacggcgtcaaatctctgacgccgtcctcaacaacattagaacgaaccatagttcc |
261 |
Q |
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| T |
6701764 |
tttcatcaatggcgcttcggaaactctttacaaagcgtcttttcgacggcgtcaaatctctgacgccgtcctcaacaacattagaacaaaccatagttcc |
6701665 |
T |
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| Q |
262 |
tcc |
264 |
Q |
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||| |
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| T |
6701664 |
tcc |
6701662 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 6701900 - 6701814
Alignment:
| Q |
30 |
atataaacaacgaaacctgcctcctactcttctcaagagcctgcaaaatctcttcactcttactacacaccatgcaataaaatctaa |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
6701900 |
atataaacaacgaaacctgcctcttactcttctcaagagcctgcaaaatctcttcactcttactatacactatgcaataacatctaa |
6701814 |
T |
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