View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1022_low_15 (Length: 252)

Name: NF1022_low_15
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1022_low_15
NF1022_low_15
[»] chr7 (12 HSPs)
chr7 (14-252)||(22530090-22530341)
chr7 (17-252)||(11509718-11509966)
chr7 (17-250)||(18148707-18148952)
chr7 (14-249)||(21860525-21860758)
chr7 (17-193)||(34705816-34706006)
chr7 (129-205)||(13694198-13694274)
chr7 (85-175)||(3377729-3377820)
chr7 (73-151)||(21501013-21501092)
chr7 (91-147)||(6019275-6019331)
chr7 (96-144)||(13386703-13386750)
chr7 (96-144)||(19193977-19194024)
chr7 (91-142)||(21498551-21498603)
[»] chr4 (11 HSPs)
chr4 (14-247)||(25127257-25127503)
chr4 (17-252)||(23972827-23973075)
chr4 (17-250)||(11150310-11150555)
chr4 (17-249)||(15703426-15703671)
chr4 (17-252)||(14644605-14644853)
chr4 (14-249)||(4529775-4530021)
chr4 (18-161)||(19612900-19613056)
chr4 (142-235)||(18875051-18875144)
chr4 (123-170)||(20770656-20770703)
chr4 (21-83)||(9565011-9565072)
chr4 (72-138)||(12385316-12385382)
[»] chr5 (6 HSPs)
chr5 (17-249)||(39437040-39437285)
chr5 (14-158)||(29496987-29497130)
chr5 (14-76)||(889842-889904)
chr5 (96-144)||(27273153-27273200)
chr5 (97-144)||(19049409-19049455)
chr5 (73-120)||(28711226-28711273)
[»] chr3 (14 HSPs)
chr3 (17-249)||(3472884-3473129)
chr3 (17-252)||(18539192-18539442)
chr3 (31-159)||(15778307-15778435)
chr3 (123-250)||(39728853-39728980)
chr3 (21-161)||(3586041-3586194)
chr3 (123-205)||(3289492-3289574)
chr3 (123-201)||(18694762-18694840)
chr3 (123-201)||(18710281-18710359)
chr3 (152-235)||(19595725-19595809)
chr3 (17-83)||(39728179-39728245)
chr3 (17-83)||(3475805-3475872)
chr3 (74-127)||(39728248-39728300)
chr3 (14-66)||(18694587-18694636)
chr3 (14-66)||(18710106-18710155)
[»] scaffold0281 (1 HSPs)
scaffold0281 (14-249)||(564-812)
[»] chr6 (10 HSPs)
chr6 (14-252)||(9547619-9547869)
chr6 (17-201)||(19770112-19770308)
chr6 (73-249)||(19891695-19891869)
chr6 (14-167)||(22468810-22468982)
chr6 (21-83)||(19565137-19565199)
chr6 (73-143)||(12876105-12876176)
chr6 (123-161)||(19565278-19565316)
chr6 (93-145)||(17729507-17729559)
chr6 (23-67)||(17729608-17729652)
chr6 (23-111)||(28851654-28851742)
[»] chr8 (8 HSPs)
chr8 (72-252)||(9882229-9882409)
chr8 (14-252)||(40387495-40387747)
chr8 (17-201)||(42145384-42145581)
chr8 (29-156)||(1216744-1216883)
chr8 (17-83)||(9882411-9882478)
chr8 (15-67)||(17289764-17289817)
chr8 (123-161)||(17289632-17289670)
chr8 (105-166)||(24699277-24699337)
[»] chr1 (11 HSPs)
chr1 (17-249)||(52272638-52272883)
chr1 (17-201)||(12785026-12785229)
chr1 (14-161)||(23633238-23633398)
chr1 (14-161)||(9132487-9132647)
chr1 (14-161)||(41137967-41138127)
chr1 (123-199)||(89911-89987)
chr1 (99-157)||(19474418-19474476)
chr1 (123-168)||(18249888-18249933)
chr1 (156-201)||(18514938-18514983)
chr1 (14-66)||(90144-90196)
chr1 (14-62)||(18514737-18514784)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-248)||(106674-106917)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-252)||(172439-172687)
[»] chr2 (13 HSPs)
chr2 (17-161)||(38991701-38991846)
chr2 (131-244)||(34892182-34892295)
chr2 (17-161)||(16092412-16092570)
chr2 (17-161)||(20264657-20264813)
chr2 (29-161)||(22385814-22385944)
chr2 (123-247)||(32625542-32625666)
chr2 (129-201)||(20178639-20178711)
chr2 (72-149)||(27401737-27401814)
chr2 (93-166)||(30613270-30613342)
chr2 (14-83)||(27401666-27401735)
chr2 (73-151)||(19402779-19402858)
chr2 (91-166)||(19467084-19467160)
chr2 (23-67)||(22576703-22576747)
[»] scaffold0323 (1 HSPs)
scaffold0323 (21-168)||(15300-15460)
[»] scaffold0498 (2 HSPs)
scaffold0498 (123-252)||(12009-12138)
scaffold0498 (16-126)||(9784-9907)
[»] scaffold0009 (2 HSPs)
scaffold0009 (123-185)||(221831-221893)
scaffold0009 (21-76)||(221979-222033)
[»] scaffold0043 (1 HSPs)
scaffold0043 (72-161)||(66663-66752)
[»] scaffold0449 (1 HSPs)
scaffold0449 (72-116)||(385-429)
[»] scaffold0196 (1 HSPs)
scaffold0196 (123-161)||(22860-22898)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 22530090 - 22530341
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatt-------------taaagatgggggataaatcagtaac 100  Q
    |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||             |||||||| ||||||||||||||||    
T  22530090 atataaagatgttcattgttgagtcattatgtgatgttcaagcattcatggtcagtccgatttaaatatgtgatttaaagatgtgggataaatcagtaac 22530189  T
Q  101 ataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaag 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  22530190 ataactctgatatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataattgtaggtctatctgaagatgtgtagttaaaag 22530289  T
Q  201 acgtgatattttaaaatgtgcaactatttaaagatataatattcaatgacgt 252  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  22530290 acgtgatattttaagatgtgcaactatttaaagatgtaatattcaatgacgt 22530341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 11509718 - 11509966
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgattta------------aagatgggggataaatcagtaacata 103  Q
    |||| ||||||||| |||||||||||| ||| |||||||||||||||||||| |||||||||            |||||||||||||||||| |||||||    
T  11509718 taaatatgtgcatttgttgagtcattacttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcaataacata 11509817  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacg 203  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |    
T  11509818 actctgatatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataactgtatgactatttgaagatgtgtaattaaaagatg 11509917  T
Q  204 tgatattttaaaatgtgcaactatttaaagatataatattcaatgacgt 252  Q
    |||||| |||| ||||| | |||||||||||| | ||||||||||||||    
T  11509918 tgatatattaagatgtgtacctatttaaagatgtgatattcaatgacgt 11509966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 18148707 - 18148952
Alignment:
Q  17 taaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgattta------------aagatgggggataaatcagtaacataa 104  Q
    |||||||||||||||| ||||||||| ||| |||||||||||||||||||| || ||||||            |||||||||||||||||||||||||||    
T  18148707 taaagatgtgcattgtcgagtcattacttggtgttcatgcattcatggtcagtctgatttaaagatgtgtttaaagatgggggataaatcagtaacataa 18148806  T
Q  105 ctctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgt 204  Q
    ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||    
T  18148807 ctcagatattcaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataattgtaggtctatttgaagatgtgtaattaaaagatgt 18148906  T
Q  205 gatattttaaaatgtgcaactatttaaagatataatattcaatgac 250  Q
    |||||||||| ||||| |  ||||||||||| | ||||||||||||    
T  18148907 gatattttaagatgtgtacatatttaaagatgtgatattcaatgac 18148952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 21860525 - 21860758
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatgggggataaatcagtaacataactctgatat 113  Q
    ||||||||||||| ||| || || ||||||||| | ||||||||| ||| || | ||||||||||||||||||||||| |||||||||||  ||||||||    
T  21860525 atataaagatgtgtattattaaggcattatttggtattcatgcat-cattgttagtccgatttaaagatgggggataa-tcagtaacatacatctgatat 21860622  T
Q  114 ccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgtgatatttta 213  Q
    ||||||  |||| ||||| |||||| ||||||||||| |||||||||||||||| || |||||||| ||||||||||||||| |||||  |  ||||| |    
T  21860623 ccaaaattagtaacacattcatatatagtcgagttagggacattgcatacataattgcaagtctatttgaagatgtgtaatttaaagatatactatttaa 21860722  T
Q  214 aaatgtgcaactatttaaagatataatattcaatga 249  Q
    | ||||| |||||||||||||  | |||||||||||    
T  21860723 atatgtgtaactatttaaagacgtgatattcaatga 21860758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 34706006 - 34705816
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatggg-------------ggataaatcagtaacat 102  Q
    |||||||||||||| ||||||||||||  || |||||||||||||||||||| ||||||||||||||| |             |||| ||||||||||||    
T  34706006 taaagatgtgcatttgttgagtcattacctggtgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatggaggattaatcagtaacat 34705907  T
Q  103 aactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaa 193  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  34705906 aactctgatatccaaaaccggtaccacatgcagatagagttgagttagagacattgcatacataactgtaggtctatttgaagatgtgtaa 34705816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 13694274 - 13694198
Alignment:
Q  129 catgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgtg 205  Q
    |||||||||||| ||||||||| |||||||||||||||  || |||||||| ||||||||||| |||||||||||||    
T  13694274 catgcatatagaatcgagttagggacattgcatacatatttgcaagtctatttgaagatgtgtgattaaaagacgtg 13694198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 3377820 - 3377729
Alignment:
Q  85 gggataaatcagtaacataactctgatatccaaaa-ccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagt 175  Q
    ||||| ||||| ||| |||||| |||||||||||| || ||||| | ||| ||||||||||||||||  |||||||||||||| ||| ||||    
T  3377820 gggattaatcaataatataactatgatatccaaaaaccggtaccgcgtgcgtatagagtcgagttaggtacattgcatacatatctgcaagt 3377729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 21501013 - 21501092
Alignment:
Q  73 atttaaagatgggggataaatcagtaacataactctgatatccaaaaccag-taccacatgcatatagagtcgagttaga 151  Q
    |||||||||||  |||| |||| |||||||||||| || ||| |||||  | |||||||||||||||||||||| |||||    
T  21501013 atttaaagatgaaggatcaatcggtaacataactccgacatctaaaacttggtaccacatgcatatagagtcgaattaga 21501092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 6019275 - 6019331
Alignment:
Q  91 aatcagtaacataactctgatatccaaaaccagtaccacatgcatatagagtcgagt 147  Q
    |||| |||||||||||| || ||||||||   |||||||||||||||||| ||||||    
T  6019275 aatcggtaacataactccgacatccaaaaatggtaccacatgcatatagaatcgagt 6019331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 13386750 - 13386703
Alignment:
Q  96 gtaacataactctgatatccaaaaccagtaccacatgcatatagagtcg 144  Q
    |||||||||||||||||||||||| | |||||||| ||||||| |||||    
T  13386750 gtaacataactctgatatccaaaa-cggtaccacaagcatataaagtcg 13386703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 19193977 - 19194024
Alignment:
Q  96 gtaacataactctgatatccaaaaccagtaccacatgcatatagagtcg 144  Q
    ||||||||||||||||||||||||   ||||||||||| ||||||||||    
T  19193977 gtaacataactctgatatccaaaa-tggtaccacatgcgtatagagtcg 19194024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 21498603 - 21498551
Alignment:
Q  91 aatcagtaacataactctgatatccaaaacc-agtaccacatgcatatagagt 142  Q
    |||||||||||||||||||| ||| ||||||  ||||||| ||||||||||||    
T  21498603 aatcagtaacataactctgacatctaaaacctggtaccacgtgcatatagagt 21498551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 25127257 - 25127503
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatt-------------taaagatgggggataaatcagtaac 100  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||||||| |||||||             |||||||||||||||||||||||||    
T  25127257 atataaagatgtgcattgtcgagtcattacatgatgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatgggggataaatcagtaac 25127356  T
Q  101 ataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaag 200  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  25127357 ataactctgatatccaaaaccggtaccacatgcatattgagtcgagttagagacattgcatacataactgtaggtctatttgaagatgtgtaattaaaag 25127456  T
Q  201 acgtgatattttaaaatgtgcaactatttaaagatataatattcaat 247  Q
    | |||||||||||| ||||| |||||||||||||| | |||||||||    
T  25127457 atgtgatattttaagatgtgtaactatttaaagatgtgatattcaat 25127503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 23973075 - 23972827
Alignment:
Q  17 taaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg-------------ggggataaatcagtaacata 103  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||             |||||||| |||||||||||    
T  23973075 taaagatgtgcattgtcgagtcattatttggtgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatgggggataattcagtaacata 23972976  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacg 203  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| |    
T  23972975 actctgatatccaaaactggtaccacatgcatatagagtcgagttagagacattgcatacataactgtaggtctatttgaagatgtgtgattaaaagatg 23972876  T
Q  204 tgatattttaaaatgtgcaactatttaaagatataatattcaatgacgt 252  Q
    ||||||||||| ||||| | |||||||||||| | ||||||||||||||    
T  23972875 tgatattttaagatgtgtacctatttaaagatgtgatattcaatgacgt 23972827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 11150555 - 11150310
Alignment:
Q  17 taaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaacataa 104  Q
    |||||||| ||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||    
T  11150555 taaagatgagcattgtcgagtcattacttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataa 11150456  T
Q  105 ctctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgt 204  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||    
T  11150455 ctctgatatccaaaaccggtacaacatgcatatagagtcgagttagagacattgcatacataactgtaggtctatttgaagatgtgtaattaaaagatgt 11150356  T
Q  205 gatattttaaaatgtgcaactatttaaagatataatattcaatgac 250  Q
    |||||||||| ||||| | ||||||||| || | ||||||||||||    
T  11150355 gatattttaagatgtgtacctatttaaatatgtgatattcaatgac 11150310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 15703671 - 15703426
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaacata 103  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||    
T  15703671 taaagatgtgcatttgttgagtcattacttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacata 15703572  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacg 203  Q
    ||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |    
T  15703571 actctgatatctaaaatcggtaccacatgtatatagagtcgagttagagacattgcatacataattgtaggtctatttgaagatgtgtaattaaaagatg 15703472  T
Q  204 tgatattttaaaatgtgcaactatttaaagatataatattcaatga 249  Q
    ||||||||||| ||||| | |||||||||||| | |||||||||||    
T  15703471 tgatattttaagatgtgtacctatttaaagatgtgatattcaatga 15703426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 14644853 - 14644605
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaacata 103  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||    
T  14644853 taaagatgtgcatttgttgagtcattatttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacata 14644754  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacg 203  Q
    ||| ||||||||||||||  || ||||||||||||||||||||||||||||||| ||||||||| | || |||||| |||| | |||||||||||||| |    
T  14644753 actatgatatccaaaaccgatatcacatgcatatagagtcgagttagagacattacatacataattataggtctatttgaaaaggtgtaattaaaagatg 14644654  T
Q  204 tgatattttaaaatgtgcaactatttaaagatataatattcaatgacgt 252  Q
    ||||||||||  || || |||||||||||||| | ||| ||||||||||    
T  14644653 tgatattttacgatatgtaactatttaaagatgtgatactcaatgacgt 14644605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 4530021 - 4529775
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg-----------ggggataaatcagtaacat 102  Q
    ||||||| || || ||||||||||||||| | | ||| |||||||||||||||| || |||||||| |||           |||||||||||||||||||    
T  4530021 atataaaaatatgtattgttgagtcattactcggtgtccatgcattcatggtcagtctgatttaaatatgtgatttaagatggggataaatcagtaacat 4529922  T
Q  103 aactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagac 202  Q
    | |||||||||||||||    |||||||||||||||||| |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||  |     
T  4529921 acctctgatatccaaaaatgttaccacatgcatatagagccgagttagagacattgcatacataactacaagtctatttgaagatgtgtaattaaataat 4529822  T
Q  203 gtgatattttaaaatgtgcaactatttaaagatataatattcaatga 249  Q
     || ||||| ||||| || |||||||||||||| | |||||||||||    
T  4529821 ttgttatttaaaaatatgtaactatttaaagatgtgatattcaatga 4529775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 19612900 - 19613056
Alignment:
Q  18 aaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatt-------------taaagatgggggataaatcagtaacataa 104  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||             ||||||||| |||| ||||||||||||||    
T  19612900 aaagatgtgcattgttgagtcattcattgatgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatggaggattaatcagtaacataa 19612999  T
Q  105 ctctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  19613000 ctctgatatccgaaaccagtaccacatgcatatagagtcgagttagggacattgcat 19613056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 18875144 - 18875051
Alignment:
Q  142 tcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgtgatattttaaaatgtgcaactatttaaagat 235  Q
    ||||||||| |||||||||||||||| || |||||||| |||| |||||||||||||||| ||  | ||| || ||||| ||||||||||||||    
T  18875144 tcgagttagggacattgcatacataattgcaagtctatatgaatatgtgtaattaaaagatgttctttttaaagatgtgtaactatttaaagat 18875051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 20770703 - 20770656
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactg 170  Q
    ||||||||||||||||||||||||||||  |||| |||||||||||||    
T  20770703 gtaccacatgcatatagagtcgagttaggtacatcgcatacataactg 20770656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 9565011 - 9565072
Alignment:
Q  21 gatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg 83  Q
    |||||||||||||||||| |||  || |||||||||||||||||||| ||| |||||| ||||    
T  9565011 gatgtgcattgttgagtctttaactg-tgttcatgcattcatggtcagtcctatttaacgatg 9565072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 12385316 - 12385382
Alignment:
Q  72 gatttaaagatgggggataaatcagtaacataactctgatatccaaaaccagtaccacatgcatata 138  Q
    ||||| |||||||||||||| || ||||||| |||| || ||||||||  | |||||||||||||||    
T  12385316 gatttgaagatgggggataactcggtaacattactcagacatccaaaattaataccacatgcatata 12385382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 39437040 - 39437285
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatggg------------ggataaatcagtaacata 103  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |            |||||||||||||| |||    
T  39437040 taaagatgtgcatttgttgagtcattatttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgtgggataaatcagtaatata 39437139  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacg 203  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |    
T  39437140 actctaatatccaaaaccggtaccacatgcatataaagtcgagttagagacattgcatacataactgcatgtctatttgaagatgtgtaattaaaagatg 39437239  T
Q  204 tgatattttaaaatgtgcaactatttaaagatataatattcaatga 249  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||    
T  39437240 tgatattttaaaatgtgtaactatttaaagatacgatattcaatga 39437285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 29496987 - 29497130
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatgggggataaatcagtaacataactctgatat 113  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||  |||||||||| ||| |||||||||||||||| |||||||||    
T  29496987 atataaagatgtgcattgttgagtcattacttggtgttcatgcattcatggtcagtctaatttaaagatcggg-ataaatcagtaacatacctctgatat 29497085  T
Q  114 ccaaaaccagtaccacatgcatatagagtcgagttagagacattg 158  Q
     ||||||  |||||||||||||||| ||||||||||| |||||||    
T  29497086 acaaaactggtaccacatgcatatatagtcgagttagcgacattg 29497130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 889842 - 889904
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgattt 76  Q
    ||||||||||||| |||||  |||||||| ||| |||||||||||||||||||| ||| ||||    
T  889842 atataaagatgtgtattgtcaagtcattacttggtgttcatgcattcatggtcagtcctattt 889904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 27273200 - 27273153
Alignment:
Q  96 gtaacataactctgatatccaaaaccagtaccacatgcatatagagtcg 144  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  27273200 gtaacataactccgatatccaaaacg-gtaccacatgcatatagagtcg 27273153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 19049455 - 19049409
Alignment:
Q  97 taacataactctgatatccaaaaccagtaccacatgcatatagagtcg 144  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  19049455 taacataactccgatatccaaaacg-gtaccacatgcatatagagtcg 19049409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 28711226 - 28711273
Alignment:
Q  73 atttaaagatgggggataaatcagtaacataactctgatatccaaaac 120  Q
    |||||| ||| | |||||||||||||||||| ||||||||||||||||    
T  28711226 atttaatgattgaggataaatcagtaacatatctctgatatccaaaac 28711273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 3472884 - 3473129
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgattta------------aagatgggggataaatcagtaacata 103  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||||||| |||||||||            ||||||||||||||||||||||||||    
T  3472884 taaagatgtgcatttgttgagtcattacttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacata 3472983  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacg 203  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |    
T  3472984 actctgatatccaaaaccggtacaacatgcatatagagtcgagttagagacattgcatacataactgtaggtctatttgaagatatgtaattaaaagatg 3473083  T
Q  204 tgatattttaaaatgtgcaactatttaaagatataatattcaatga 249  Q
    ||||||||||| ||||| | |||||||||||| | |||||||||||    
T  3473084 tgatattttaagatgtgtacctatttaaagatgtgatattcaatga 3473129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 18539192 - 18539442
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatt-------------taaagatgggggataaatcagtaacat 102  Q
    |||||||||||||| |||||||||||| ||| |||||||||||||||| ||| |||||||             |||||||||| ||||||||||||| ||    
T  18539192 taaagatgtgcatttgttgagtcattacttggtgttcatgcattcatgttcagtccgatttaaatatgtgatttaaagatgggagataaatcagtaagat 18539291  T
Q  103 aactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagac 202  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||     
T  18539292 aactctaaaatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataactgtaggtatatttgaagatgtgtaattaaaagat 18539391  T
Q  203 gtgatattttaaaatgtgcaacta-tttaaagatataatattcaatgacgt 252  Q
    || ||| ||||| || || ||||| |||||||||   ||||||||||||||    
T  18539392 gtaatactttaagatctgtaactattttaaagatgcgatattcaatgacgt 18539442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 15778307 - 15778435
Alignment:
Q  31 gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatgggggataaatcagtaacataactctgatatccaaaaccagtaccaca 130  Q
    |||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15778307 gttgagtcattacttggtgttcatgcattcatggtcggtccgatttaaagatgggggataaatcagtaacataactctgatatccaaaatcagtaccaca 15778406  T
Q  131 tgcatatagagtcgagttagagacattgc 159  Q
    |||||||||||||||||||| ||||||||    
T  15778407 tgcatatagagtcgagttagggacattgc 15778435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 39728853 - 39728980
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgtgatattttaaaatgtgca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||| ||||| |    
T  39728853 gtaccacatgcatatagagtcgagttagagacattgcatacataattgtaggtctatttgaagatgtgtaattaaaagaagtgatattttaagatgtgta 39728952  T
Q  223 actatttaaagatataatattcaatgac 250  Q
      ||||||||||| | ||||||||||||    
T  39728953 cgtatttaaagatgtgatattcaatgac 39728980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 3586194 - 3586041
Alignment:
Q  21 gatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatgggg------------gataaatcagtaacataactc 107  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |             ||| |||||||||||||||||    
T  3586194 gatgtgcatttgttgagtcattacttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgcgagattaatcagtaacataactc 3586095  T
Q  108 tgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    |||||||||||| | |||| ||||||||||||||||||||||| ||||||||||    
T  3586094 tgatatccaaaatcggtactacatgcatatagagtcgagttagggacattgcat 3586041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 3289574 - 3289492
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgtg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||| |||||||||    
T  3289574 gtaccacatgcatatagagtcgagttagagacattgcatacataactacaagtctatttgaagatgtgtgatttaaagacgtg 3289492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 18694762 - 18694840
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaaga 201  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  | |||||||||||||||||||    
T  18694762 gtaccacatgcatatagagtcgagttagggacattgcatacataactgcaagtctacttaaagatgtgtaattaaaaga 18694840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 18710281 - 18710359
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaaga 201  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  | |||||||||||||||||||    
T  18710281 gtaccacatgcatatagagtcgagttagggacattgcatacataactgcaagtctacttaaagatgtgtaattaaaaga 18710359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 19595809 - 19595725
Alignment:
Q  152 gacattgcatacataactgtaagtctatct-gaagatgtgtaattaaaagacgtgatattttaaaatgtgcaactatttaaagat 235  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  19595809 gacattgcatacataactgcaagtctattttgaagatgtgtaattaaaagatgtgatatttaaaaatgtataactatttaaagat 19595725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 39728179 - 39728245
Alignment:
Q  17 taaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg 83  Q
    |||||||||||||||| ||| ||||| ||| |||||||||||||||||||| |||||||||||||||    
T  39728179 taaagatgtgcattgtcgagacattacttggtgttcatgcattcatggtcagtccgatttaaagatg 39728245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 3475872 - 3475805
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg 83  Q
    |||||||||||||| |||||||||||| ||| ||||||||||||| |||||| |||||||||||||||    
T  3475872 taaagatgtgcatttgttgagtcattagttgttgttcatgcattcttggtcagtccgatttaaagatg 3475805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 39728248 - 39728300
Alignment:
Q  74 tttaaagatgggggataaatcagtaacataactctgatatccaaaaccagtacc 127  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||| |||||    
T  39728248 tttaaagatgggggataaaccagtt-cataactctgatatccaaaaccggtacc 39728300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 18694587 - 18694636
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtc 66  Q
    ||||||||||||||||||| |||||||| ||   |||||||||||||||||||    
T  18694587 atataaagatgtgcattgtcgagtcattttt---tgttcatgcattcatggtc 18694636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 18710106 - 18710155
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtc 66  Q
    ||||||||||||||||||| |||||||| ||   |||||||||||||||||||    
T  18710106 atataaagatgtgcattgtcgagtcattttt---tgttcatgcattcatggtc 18710155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 812 - 564
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg-------------ggggataaatcagtaac 100  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||             |||||||||||||||||    
T  812 atataaagatgtgcattgtcgagtcattacttggtgttcatgcattcatggtcagtccgatttaaagatgtgatttaaagatgggggataaatcagtaac 713  T
Q  101 ataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaag 200  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||  ||||||||||    
T  712 atatctctgatatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataactgcaggtctatttgaagatgcataattaaaag 613  T
Q  201 acgtgatattttaaaatgtgcaactatttaaagatataatattcaatga 249  Q
    | |||||||||||| ||||| || ||||||||||| | |||||||||||    
T  612 atgtgatattttaagatgtgtaaatatttaaagatgtgatattcaatga 564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 9547869 - 9547619
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaaca 101  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| |||||||| | |||||||||||||            ||||||||||||||||||    
T  9547869 atataaagatgtgcattgttgagtcagtatttgatgtacatgcatgcatggtcagttcgatttaaagatgtgatttaaagatggggataaatcagtaaca 9547770  T
Q  102 taactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaaga 201  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||    
T  9547769 taactttgatatccaaaaccggtaccacatgcatgtagagtcgagttagagacattgcatacataactgtaggtctatttgaagatgtgtaattataaga 9547670  T
Q  202 cgtgatattttaaaatgtgcaactatttaaagatataatattcaatgacgt 252  Q
     ||||| ||| || |||||  ||||||||||||| | ||||||||||||||    
T  9547669 tgtgatgtttcaagatgtgtgactatttaaagatgtgatattcaatgacgt 9547619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 19770112 - 19770308
Alignment:
Q  17 taaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgattta------------aagatgggggataaatcagtaacataa 104  Q
    |||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||            |||||||||||||||||||||||||||    
T  19770112 taaagatgtgcattgtcgagtcattacttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataa 19770211  T
Q  105 ctctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaaga 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  19770212 ctctgatatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataactgtaggtctatttgaagatgtgtaattaaaaga 19770308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 73 - 249
Target Start/End: Complemental strand, 19891869 - 19891695
Alignment:
Q  73 atttaaagatgggggataaatcagtaacataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgta 172  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19891869 atttaaagatggggtataaatcagtaacataactc--atatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataagtgta 19891772  T
Q  173 agtctatctgaagatgtgtaattaaaagacgtgatattttaaaatgtgcaactatttaaagatataatattcaatga 249  Q
     |||||| ||||||||||||||| ||||| |||||||||||| ||||| | |||||||||||| | |||||||||||    
T  19891771 ggtctatttgaagatgtgtaatttaaagatgtgatattttaagatgtgtacctatttaaagatgtgatattcaatga 19891695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 22468982 - 22468810
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg-------------------ggggataaatc 94  Q
    |||||| ||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||                   |||||||||||    
T  22468982 atataaggatgtgcattgttcagttattacttggtgttcatgcattcatggtcaatccgatttaaagatgtaatttaagatttaaagatggggataaatc 22468883  T
Q  95 agtaacataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataa 167  Q
    ||||||| | |||||||||||||||   |||| |||||||||||||||||||||||  |||||||||||||||    
T  22468882 agtaacacacctctgatatccaaaatatgtactacatgcatatagagtcgagttaggaacattgcatacataa 22468810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 19565137 - 19565199
Alignment:
Q  21 gatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg 83  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||| ||| |||||| ||||    
T  19565137 gatgtgcattgttgagtcattacttggtgttcatgcattcatgctcagtcctatttaacgatg 19565199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 12876105 - 12876176
Alignment:
Q  73 atttaaagatgggggataaatcagtaacataactctgatatccaaaac-cagtaccacatgcatatagagtc 143  Q
    ||||||||||||||||| | || ||||||||||||||| |||||||||   ||||||||| |||||||||||    
T  12876105 atttaaagatgggggattactcggtaacataactctgacatccaaaacatggtaccacatacatatagagtc 12876176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 19565278 - 19565316
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  19565278 gtaccacatgcatatagattcgagttagagacattgcat 19565316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 17729559 - 17729507
Alignment:
Q  93 tcagtaacataactctgatatccaaaaccagtaccacatgcatatagagtcga 145  Q
    |||| |||||| || |||||||||||| | |||||||||||||||| ||||||    
T  17729559 tcagaaacatacctatgatatccaaaaacggtaccacatgcatatatagtcga 17729507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 17729652 - 17729608
Alignment:
Q  23 tgtgcattgttgagtcattatttgatgttcatgcattcatggtca 67  Q
    |||||||||| ||||||| || |||| ||||||||||||||||||    
T  17729652 tgtgcattgtcgagtcatgatatgatattcatgcattcatggtca 17729608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 28851742 - 28851654
Alignment:
Q  23 tgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatgggggataaatcagtaacataactctgat 111  Q
    |||||||||| |||||  || ||| |||  ||||||||||||||| ||| |||| | | || ||||| ||||||||||||| |||||||    
T  28851742 tgtgcattgtcgagtctatacttggtgtcgatgcattcatggtcagtcctatttgacgttgtgggattaatcagtaacatacctctgat 28851654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 72 - 252
Target Start/End: Complemental strand, 9882409 - 9882229
Alignment:
Q  72 gatttaaagatgggggataaatcagtaacataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgt 171  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9882409 gatttaaagatgggggattaatcagtaacataactctgatatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataactgt 9882310  T
Q  172 aagtctatctgaagatgtgtaattaaaagacgtgatattttaaaatgtgcaactatttaaagatataatattcaatgacgt 252  Q
    | |||||| |||||||||||||||||| || |||||||||||| ||||  || | ||||||||| | ||||||||||||||    
T  9882309 aggtctatttgaagatgtgtaattaaatgatgtgatattttaagatgtttaagtgtttaaagatgtgatattcaatgacgt 9882229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 40387747 - 40387495
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgt--tcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaa 99  Q
    ||||||||||||||||||| ||||||||| ||| |||  ||||||||||||||| | |||||||||||||||            ||||||||||||||||    
T  40387747 atataaagatgtgcattgtcgagtcattacttggtgtgttcatgcattcatggtaagtccgatttaaagatgtgatttaaagatggggataaatcagtaa 40387648  T
Q  100 cataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaa 199  Q
    ||||||||| |||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  40387647 cataactctaatatccaaaactggtaccacatgcatatagagtcgagttagaaacattgcatacataactgtaggtctatttgaagatgtgtaattaaaa 40387548  T
Q  200 gacgtgatattttaaaatgtgcaactatttaaagatataatattcaatgacgt 252  Q
    ||  ||||| ||||| ||||| |||||||||||||| | ||||||||||||||    
T  40387547 gatctgataatttaagatgtgtaactatttaaagatgtgatattcaatgacgt 40387495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 42145581 - 42145384
Alignment:
Q  17 taaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaa-------------agatgggggataaatcagtaacata 103  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||| |||||| ||||||||||             ||||||| |||||||||||||||||    
T  42145581 taaagatgtgcattattgagtcattacttggtgttcatgcattcttggtcagtccgatttaatgatgtgatttaaagatgggagataaatcagtaacata 42145482  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaaga 201  Q
     || |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||  || ||||| |||| |||||| |||||||||    
T  42145481 cctttgatatccaaaatcagtaccacatgcatatagagtcgagttagggacattgcatatataactacaaatctatttgaatatgtgtgattaaaaga 42145384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 1216883 - 1216744
Alignment:
Q  29 ttgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaa------------gatgggggataaatcagtaacataactctgatatcca 116  Q
    |||||||||||||||||| |||||||||||||||||| | |||||||||||            |||||||||||||||| ||| |||| |||||||||||    
T  1216883 ttgttgagtcattatttggtgttcatgcattcatggttagtccgatttaaacatgtgtttaaagatgggggataaatcaataagataattctgatatcca 1216784  T
Q  117 aaaccagtaccacatgcatatagagtcgagttagagacat 156  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  1216783 aaaccggtaccacatgcatatagagtcgagttagggacat 1216744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 9882478 - 9882411
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg 83  Q
    |||||||||||||| | | |||||||| ||| |||||||||||||||||||| |||||||||||||||    
T  9882478 taaagatgtgcatttggtaagtcattacttggtgttcatgcattcatggtcagtccgatttaaagatg 9882411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 17289817 - 17289764
Alignment:
Q  15 tataaagatgtgcattgttgagtcatta-tttgatgttcatgcattcatggtca 67  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||    
T  17289817 tataaagatgtgcattgtcgagtcattagtttggtgttcatgcattcatggtca 17289764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 17289670 - 17289632
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  17289670 gtaccacatgcatatagagtcgagttagggacattgcat 17289632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 24699277 - 24699337
Alignment:
Q  105 ctctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacata 166  Q
    |||||||||||||||   ||| |||||| ||||| |||||||||||| ||||||||||||||    
T  24699277 ctctgatatccaaaaatggtatcacatgtatataaagtcgagttaga-acattgcatacata 24699337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 52272883 - 52272638
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatggg------------ggataaatcagtaacata 103  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||||||||||| |            ||||||||||||||||||    
T  52272883 taaagatgtgcatttgttgagtcattatttagtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgtgggataaatcagtaacata 52272784  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacg 203  Q
    ||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |  ||||| ||||||||||||||||||||| |    
T  52272783 actatgatatccaaaaccgataccacatgcatatagagtcgagttagagacattgcatacacaactgcagttctatttgaagatgtgtaattaaaagatg 52272684  T
Q  204 tgatattttaaaatgtgcaactatttaaagatataatattcaatga 249  Q
    ||||||||||| ||||| || |||||||||||   |||||||||||    
T  52272683 tgatattttaagatgtgtaaatatttaaagatgcgatattcaatga 52272638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 12785229 - 12785026
Alignment:
Q  17 taaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaacataa 104  Q
    |||||||||||||||| ||||||||| ||  |||||||||||||||||||| |||||||||||||||            |||||||||||||||||||||    
T  12785229 taaagatgtgcattgtcgagtcattacttagtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataa 12785130  T
Q  105 ctctgatatc-------caaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaa 197  Q
    ||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||    
T  12785129 ctctgatatctgatatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataattgtaggtctatttgaagatgtgtaattaa 12785030  T
Q  198 aaga 201  Q
    ||||    
T  12785029 aaga 12785026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 23633238 - 23633398
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatt-------------taaagatgggggataaatcagtaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||             |||||||||||||||||||||||||    
T  23633238 atataaagatgtgcattgttgagtcattatttgatgttcatgaattcatggtcagtccgatttaaagatgtgatttaaagatgggggataaatcagtaac 23633337  T
Q  101 ataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  23633338 ataactctgatatccaaaaccggtaccacatgcatatagagtcgagttagtgacattgcat 23633398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 9132487 - 9132647
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatt-------------taaagatgggggataaatcagtaac 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| || | |||||||             |||||||||||||||||||||||||    
T  9132487 atataaagatgtgcattgttgagtcattatttggtgttcatgcattcatagttagtccgatttaaagatgtgatttaaagatgggggataaatcagtaac 9132586  T
Q  101 ataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  9132587 atacctctgatatccaaaaccggtaccacatgcatatagagtcgagttagggacattgcat 9132647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 41137967 - 41138127
Alignment:
Q  14 atataaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgattta------------aagatgggggataaatcagtaac 100  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||||||| |||||||||            |||||||||||||||||||||||    
T  41137967 atataaagatgtgcatttgttgagtcattattttgtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaac 41138066  T
Q  101 ataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    ||||||||||||||||||||  ||||||||||||||||||||| |||||  ||||||||||    
T  41138067 ataactctgatatccaaaactggtaccacatgcatatagagtcaagttaaggacattgcat 41138127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 89987 - 89911
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaa 199  Q
    |||| ||||||||||||||||||||||| |||||||||||||| |||| |||| ||  |||||||||||||||||||    
T  89987 gtactacatgcatatagagtcgagttagggacattgcatacattactgcaagtttacttgaagatgtgtaattaaaa 89911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 19474418 - 19474476
Alignment:
Q  99 acataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacatt 157  Q
    ||||| ||||||||| ||||| | ||||||||||||||||||||| |||||| ||||||    
T  19474418 acatacctctgatattcaaaaacggtaccacatgcatatagagtcaagttagggacatt 19474476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 18249888 - 18249933
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataac 168  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||    
T  18249888 gtaccacatgcatatagagtcgagttaaggacattacatacataac 18249933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 18514938 - 18514983
Alignment:
Q  156 ttgcatacataactgtaagtctatctgaagatgtgtaattaaaaga 201  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||    
T  18514938 ttgcatacataactgcaagtctacttgaagatgtgtaattaaaaga 18514983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 90196 - 90144
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtc 66  Q
    |||||||||||||| |||| ||||||||| ||  |||||||||||||||||||    
T  90196 atataaagatgtgctttgtcgagtcattactttgtgttcatgcattcatggtc 90144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 18514737 - 18514784
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcat 62  Q
    ||||||||||||||||||| |||||||  |||| |||||||||||||||    
T  18514737 atataaagatgtgcattgtcgagtcatactttg-tgttcatgcattcat 18514784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 106917 - 106674
Alignment:
Q  17 taaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaacataa 104  Q
    ||||||| |||||||| ||||||||  |||| |||||||||||||| ||||  | ||||||||||||            ||| |||||||||||||||||    
T  106917 taaagatatgcattgtcgagtcatttgttgaggttcatgcattcatagtcagactgatttaaagatgtgatttaaagacgggaataaatcagtaacataa 106818  T
Q  105 ctctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgt 204  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||    
T  106817 ctctgatatccaaaaccggtaccacatgcatatagagtcgagttagagacattgcatacataactgtaggtctatttgaagatgtgtaattaaaagatgt 106718  T
Q  205 gatattttaaaatgtgcaactatttaaagatataatattcaatg 248  Q
    |||||||||| | ||| || ||||| ||||| | ||||||||||    
T  106717 gatattttaagaagtgtaattattttaagatgtgatattcaatg 106674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 172439 - 172687
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgattta------------aagatgggggataaatcagtaacata 103  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||            ||||||||||||||||||||||||||    
T  172439 taaagatgtgcatttgttgagtcattatttggtgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacata 172538  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacg 203  Q
    ||| ||||||||||||||  || ||||||||||||||||||||||||||||||| ||||||||| | || |||||| |||| | |||||||||||||| |    
T  172539 actatgatatccaaaaccgatatcacatgcatatagagtcgagttagagacattacatacataattataggtctatttgaaaaggtgtaattaaaagatg 172638  T
Q  204 tgatattttaaaatgtgcaactatttaaagatataatattcaatgacgt 252  Q
    ||||||||||  || || |||||||||||||| | ||| ||||||||||    
T  172639 tgatattttacgatatgtaactatttaaagatgtgatactcaatgacgt 172687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 38991846 - 38991701
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatgggggataaatcagtaacataactctgatatcc 115  Q
    |||||||||| ||| || ||||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||    
T  38991846 taaagatgtgtatttgtcgagtcattacttgatgttcatgcattcatggtcattctgatttaaagatggaggataaatcagtaacatacctctgatatcc 38991747  T
Q  116 aaaaccagtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||    
T  38991746 aaaaccggtaccacatgcatatagagtcgagttagggacattgcat 38991701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 34892295 - 34892182
Alignment:
Q  131 tgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgtgatattttaaaatgtgcaactattta 230  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||| | |||||||    
T  34892295 tgcatatagagtcgagttagagacattgcatacataactgtaggtctatttgaagatgtgtaattaaaagatgtgatattttaagatgtgtacctattta 34892196  T
Q  231 aagatataatattc 244  Q
    ||||| | ||||||    
T  34892195 aagatgtgatattc 34892182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 16092570 - 16092412
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg-------------ggggataaatcagtaacat 102  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| ||| |||||||||||||||             |||||||||||||||||||    
T  16092570 taaagatgtgcatttgttgagtcattatttggtgttcatgcattcatgatcagtccgatttaaagatgtgatttaaagatgggggataaatcagtaacat 16092471  T
Q  103 aactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    ||||||||||| ||||||| ||||||||| |||||| ||||||||||| ||||||||||    
T  16092470 aactctgatattcaaaaccggtaccacatacatatatagtcgagttagggacattgcat 16092412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 20264657 - 20264813
Alignment:
Q  17 taaagatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaacata 103  Q
    |||||||||||||| || ||||||||| ||| |||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||    
T  20264657 taaagatgtgcattcgtcgagtcattacttg-tgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagctgggggataaatcagtaacata 20264755  T
Q  104 actctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  20264756 actctgatgttcaaaacaagtaccacatgcatatagagtcgagttagggacattgcat 20264813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 22385944 - 22385814
Alignment:
Q  29 ttgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatgggggataaatcagtaacataactctgatatccaaaaccagtacca 128  Q
    |||| |||| |||||||| |||||||||||||||||| | || ||||||||||||| |||||||||||||||||| |||||||||||| |||| ||| ||    
T  22385944 ttgtcgagttattatttggtgttcatgcattcatggtgagtctgatttaaagatggaggataaatcagtaacatacctctgatatccataaccggtatca 22385845  T
Q  129 catgcatatagagtcgagttagagacattgcat 161  Q
    ||||  |||||||||||||| || |||||||||    
T  22385844 catg--tatagagtcgagtttgaaacattgcat 22385814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 32625542 - 32625666
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgtgatattttaaaatgtgca 222  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||| |||  |||| || | ||| |    
T  32625542 gtaccacatgcatatagagtcgagttagggacattgcatacataactgcaagtctacttgaagatgtgtaattaaaagatgtgtaatttaaagacgtgta 32625641  T
Q  223 actatttaaagatataatattcaat 247  Q
    | ||||||||||| | |||||||||    
T  32625642 attatttaaagatgtgatattcaat 32625666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 20178711 - 20178639
Alignment:
Q  129 catgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaaga 201  Q
    |||||||||||||||||||||| |||||||||||||||| || | ||| || ||||||||||| |||||||||    
T  20178711 catgcatatagagtcgagttagggacattgcatacataattgcatgtcaatttgaagatgtgtgattaaaaga 20178639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 27401737 - 27401814
Alignment:
Q  72 gatttaaagatgggggataaatcagtaacataactctgatatccaaaaccagtaccacatgcatatagagtcgagtta 149  Q
    ||||||||||||||| ||| ||||| | |||| ||||||||||||||| | ||| |||| ||||||||||||||||||    
T  27401737 gatttaaagatggggaatacatcaggagcatacctctgatatccaaaatcggtatcacaagcatatagagtcgagtta 27401814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 30613270 - 30613342
Alignment:
Q  93 tcagtaacataactctgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacata 166  Q
    |||| |||||| |||||||||||||||   |||||||||||||||| |||||||||||| ||||||||||||||    
T  30613270 tcagaaacatacctctgatatccaaaaaaggtaccacatgcatataaagtcgagttaga-acattgcatacata 30613342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 27401666 - 27401735
Alignment:
Q  14 atataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg 83  Q
    |||||||||||| |||||||||||| ||| ||  |||||||| ||||||| ||| |||||||||||||||    
T  27401666 atataaagatgtacattgttgagtcgttacttagtgttcatgtattcatgatcagtccgatttaaagatg 27401735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 19402779 - 19402858
Alignment:
Q  73 atttaaagatgggggataaatcagtaacataactctgatatccaaaac-cagtaccacatgcatatagagtcgagttaga 151  Q
    |||||||||||  |||| ||||||||||||||||| || |||||||||  | |||||| |||||||| |||||| |||||    
T  19402779 atttaaagatgaaggatcaatcagtaacataactccgacatccaaaacttaataccacgtgcatatacagtcgaattaga 19402858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 19467084 - 19467160
Alignment:
Q  91 aatcagtaacataactctgatatccaaaaccag-taccacatgcatatagagtcgagttagagacattgcatacata 166  Q
    |||||||| |||| |||||||||||||||   | |||||||||||| || ||| |||||||  ||||||||||||||    
T  19467084 aatcagtaccatacctctgatatccaaaaattggtaccacatgcatgtacagttgagttaggtacattgcatacata 19467160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 22576747 - 22576703
Alignment:
Q  23 tgtgcattgttgagtcattatttgatgttcatgcattcatggtca 67  Q
    |||||||||||||||| ||| |||| |||||||||||||| ||||    
T  22576747 tgtgcattgttgagtccttacttgaagttcatgcattcatagtca 22576703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 15460 - 15300
Alignment:
Q  21 gatgtgcatt-gttgagtcattatttgatgttcatgcattcatggtcaatccgatttaaagatg------------ggggataaatcagtaacataactc 107  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||||||    
T  15460 gatgtgcatttgttgagtcattatttgatgttcatgcattcatggtcagtccgatttaaagatgtgtttaaagatgggggataaatcagtaacataactc 15361  T
Q  108 tgatatccaaaaccagtaccacatgcatatagagtcgagttagagacattgcatacataac 168  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||    
T  15360 tgatatccaaaaccggtactacatgcatatagagtcgagttagagacattgcttacataac 15300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 123 - 252
Target Start/End: Complemental strand, 12138 - 12009
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaagatgtgtaattaaaagacgtgatattttaaaatgtgca 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||| |    
T  12138 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaggtctatttgaagatgtgtaattaaaagatgtgatattttaagatgtgta 12039  T
Q  223 actatttaaagatataatattcaatgacgt 252  Q
    ||||||||| ||| |   ||||||||||||    
T  12038 actatttaaggatgtgtcattcaatgacgt 12009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 9907 - 9784
Alignment:
Q  16 ataaagatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatcc-------------gatttaaagatgggggataaatcagtaacat 102  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||             |||||||||||||||||||||||||||||||    
T  9907 ataaagatgtgcattgttgagtcattaattgatgttcatgcattcatggtcggtccgatctaaagatatgatttaaagatgggggataaatcagtaacat 9808  T
Q  103 aactctgatatccaaaaccagtac 126  Q
    ||||||||||| ||||||| ||||    
T  9807 aactctgatattcaaaaccggtac 9784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 221893 - 221831
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcatacataactgtaagtctatctgaag 185  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||||    
T  221893 gtaccacatgcatatagagtcgagttagtgacattgcatacataactgcaagtatatttgaag 221831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 222033 - 221979
Alignment:
Q  21 gatgtgcattgttgagtcattatttgatgttcatgcattcatggtcaatccgattt 76  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||| ||| ||||    
T  222033 gatgtgcattgttgagtctttacttg-tgttcatgcattcatggtcagtcctattt 221979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 66663 - 66752
Alignment:
Q  72 gatttaaagatgggggataaatcagtaacataactctgatatccaaaaccagtaccacatg--catatagagtcgagttagagacattgcat 161  Q
    ||||||||||||||   |||||||  |||||| ||||||||||||||||| |||| |||||  |||||||||||||||||| ||||||||||    
T  66663 gatttaaagatgggt--taaatcaacaacatacctctgatatccaaaaccggtacgacatgtgcatatagagtcgagttagggacattgcat 66752  T

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Target: scaffold0449 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 385 - 429
Alignment:
Q  72 gatttaaagatgggggataaatcagtaacataactctgatatcca 116  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||    
T  385 gatttaaagatggaggataaatcagtaacataactttgatatcca 429  T

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Target: scaffold0196 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 22898 - 22860
Alignment:
Q  123 gtaccacatgcatatagagtcgagttagagacattgcat 161  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  22898 gtaccacatgcatatagagtcgagttagaggcatcgcat 22860  T

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