View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1022_low_19 (Length: 206)
Name: NF1022_low_19
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1022_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 39509369 - 39509495
Alignment:
| Q |
1 |
tagacatatcatccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgatagaactatcctcatg |
100 |
Q |
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| T |
39509369 |
tagacatatcatccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgttagaactatcctcatg |
39509468 |
T |
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| Q |
101 |
aggttctctgtgtactgcacctctctg |
127 |
Q |
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| T |
39509469 |
aggttctctatgtactgcacctctctg |
39509495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 39516445 - 39516563
Alignment:
| Q |
9 |
tcatccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgatagaactatcctcatgaggttctc |
108 |
Q |
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| T |
39516445 |
tcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaattgatacagaagcactgctagaactatcctcatgaggttctc |
39516544 |
T |
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| Q |
109 |
tgtgtactgcacctctctg |
127 |
Q |
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| T |
39516545 |
tatgtactgcacctctctg |
39516563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 39574293 - 39574392
Alignment:
| Q |
10 |
catccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgatagaactatcctcatgaggttctct |
109 |
Q |
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| T |
39574293 |
catccacttcagtcggtgtagacagagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatgcggttctct |
39574392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 39578826 - 39578925
Alignment:
| Q |
10 |
catccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgatagaactatcctcatgaggttctct |
109 |
Q |
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| T |
39578826 |
catccactttagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatgtggttctct |
39578925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 39542458 - 39542543
Alignment:
| Q |
10 |
catccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgatagaactatcc |
95 |
Q |
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| T |
39542458 |
catccacttcagtcagtgcagacagagaaggtaaacgctgaacattaggcaattgaagtgacgcaaaagcactgctagaactatcc |
39542543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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