View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1022_low_6 (Length: 375)
Name: NF1022_low_6
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1022_low_6 |
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| [»] scaffold1407 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 15932793 - 15933133
Alignment:
| Q |
30 |
ctttttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaatt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932793 |
ctttttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaatt |
15932892 |
T |
|
| Q |
130 |
gcaattttgaattaagtaactatttcaatcgctagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccg |
229 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15932893 |
gcaattttgaattaagtaactatttcaattgctagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgcca |
15932992 |
T |
|
| Q |
230 |
tgttgctacctaccttgttataactcaagccgtgagtttatattgttgggtggctatttaattgaatttcaattgctaagaattcaatagtgccgtgtgt |
329 |
Q |
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|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15932993 |
tgttgctacctaccttgctataactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgt |
15933092 |
T |
|
| Q |
330 |
atttcttcaaattcctggctgcaccgtccgttcatctcact |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15933093 |
atttcttcaaattcctggctgcaccgtccgttcatttcact |
15933133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 15941135 - 15941475
Alignment:
| Q |
30 |
ctttttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaatt |
129 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15941135 |
ctttttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaatt |
15941234 |
T |
|
| Q |
130 |
gcaattttgaattaagtaactatttcaatcgctagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccg |
229 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15941235 |
gcaattttgaattaagtaactatttcaattgctagttcctgttttcatcattcctttttcattccaacttagtttttcttgccatattttccaattgccg |
15941334 |
T |
|
| Q |
230 |
tgttgctacctaccttgttataactcaagccgtgagtttatattgttgggtggctatttaattgaatttcaattgctaagaattcaatagtgccgtgtgt |
329 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15941335 |
tgttgctacctaccttgctataactcaagccgtgagtctatattgttgggtggctatttaattgaatttccattgctaagaattcaatagtgccgtgtgt |
15941434 |
T |
|
| Q |
330 |
atttcttcaaattcctggctgcaccgtccgttcatctcact |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15941435 |
atttcttcaaattcctggctgcaccgtccgttcatttcact |
15941475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 370
Target Start/End: Original strand, 11164224 - 11164571
Alignment:
| Q |
30 |
ctttttagagagaaactgtgttatttagaaactg-------cttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaaccttt |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11164224 |
ctttttagagagaaattgtgttatttagaaactgattattgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaaccttt |
11164323 |
T |
|
| Q |
123 |
gttaattgcaattttgaattaagtaactatttcaatcgctagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattttcca |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11164324 |
cttaattgcaattttgaattaagtaactatttcaatttctagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattttcca |
11164423 |
T |
|
| Q |
223 |
attgccgtgttgctacctaccttgttataactcaagccgtgagtttatattgttgggtggctatttaattgaatttcaattgctaagaattcaatagtgc |
322 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11164424 |
attgccgtgttgctacctaccttgctttaactcaagccatgagtctatattgttgtgtggctatttaattgaatttccattgctaagaattcaatagtgc |
11164523 |
T |
|
| Q |
323 |
cgtgtgtatttcttcaaattcctggctgcaccgtccgttcatctcact |
370 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11164524 |
cgtgtgtatttcttcaaattcctggctgcaccgtccgttcatttcact |
11164571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 62 - 370
Target Start/End: Original strand, 34657257 - 34657565
Alignment:
| Q |
62 |
tgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaattgcaattttgaattaagtaactatttcaatcgc |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
34657257 |
tgcttatcgtaatttaagcttttgtttagctatcgtacaattttacaatttcagaacctttgttaattgcaattttgaattaagttactatttcaatttc |
34657356 |
T |
|
| Q |
162 |
tagttcctgttttcatcattcctttttcattccaatttagtttttcttgccatattttccaattgccgtgttgctacctaccttgttataactcaagccg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
34657357 |
tagttcctgttttcatcattcctttttcattccaatttagtttttcttgccgtattttccaattgccgtgttgctacctaccttgctttaactcaagccg |
34657456 |
T |
|
| Q |
262 |
tgagtttatattgttgggtggctatttaattgaatttcaattgctaagaattcaatagtgccgtgtgtatttcttcaaattcctggctgcaccgtccgtt |
361 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34657457 |
tgagtctatattgttgggtggctatttaattgaatttccattgctaagaattcaatagtgctgtgtgtatttcttcaaattcctggctgcaccgtccgtt |
34657556 |
T |
|
| Q |
362 |
catctcact |
370 |
Q |
| |
|
||| ||||| |
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|
| T |
34657557 |
catttcact |
34657565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 1346 - 1239
Alignment:
| Q |
30 |
ctttttagagagaaactgtgttatttagaaactgcttatcgtaatttaagcttttgtttagctatcgtacaatt-ttacaatttcagaacctttgttaat |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||| ||| |
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| T |
1346 |
ctttttagagagaaactgtgttatttagaaactgcttat-gtaattcaagcttttgtttagctatcatacaattcttacaacttcagaacctttgtgaat |
1248 |
T |
|
| Q |
129 |
tgcaatttt |
137 |
Q |
| |
|
||||||||| |
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| T |
1247 |
tgcaatttt |
1239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 32501 - 32609
Alignment:
| Q |
32 |
ttttagagagaaactgtgttatttag-aaactgcttatcgtaatttaagctttt--gtttagctatcgtacaat-tttacaatttcagaacctttgttaa |
127 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||||| |||||||| ||||||||||||||||| |||||| ||||||| |||||| || |
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| T |
32501 |
ttttagagagaaactgtgctatttagaaaactgcttat-gtaattcaagctttttgttttagctatcgtacaatccttacaacttcagaatctttgtgaa |
32599 |
T |
|
| Q |
128 |
ttgcaatttt |
137 |
Q |
| |
|
|||||||||| |
|
|
| T |
32600 |
ttgcaatttt |
32609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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