View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1022_low_7 (Length: 350)
Name: NF1022_low_7
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1022_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 38826601 - 38826910
Alignment:
| Q |
30 |
gtatcctccaatgacgtggataacaacaaacaagttagcagcggcaatgagccaagtaggatgctctagcgtgatgaggatgttatcatcaacggagttt |
129 |
Q |
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| T |
38826601 |
gtatcctccaatgacgtggataacaacaaacaagttagcagcggcaatgagccaagtaggatgctctagcgtgatgaggatgttatcatcaactgagttt |
38826700 |
T |
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| Q |
130 |
ccaaacatatagtatccaataaacgcaacagggaagtagcagaatgcaactcctatgtatgcaaaaataactcctttccacatgggtttcttagaaggat |
229 |
Q |
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| T |
38826701 |
ccgaacatatagtatccaataaaggcaacagggaagtagcagaatgcaactcctatgtatgcaaaaataactcctttccacatgggtttcttagaaggat |
38826800 |
T |
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| Q |
230 |
tctctggggttgatggcatagttgcttggatttcaagaaccacgttgtgtcctgcatatgcaaatgctacatctcccaatgcagataggaaattgaatac |
329 |
Q |
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| T |
38826801 |
tctctggggttgatggcatagttgcttggatttcaagaaccacgttgtgtcctgcatatgcaaatgctacatctcccaatgcagataggaaattgaatac |
38826900 |
T |
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| Q |
330 |
agcaacagct |
339 |
Q |
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| T |
38826901 |
agcatcagct |
38826910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 307
Target Start/End: Complemental strand, 34410018 - 34409785
Alignment:
| Q |
74 |
caatgagccaagtaggatgctctagcgtgatgaggatgttatcatcaacggagtttccaaacatatagtatccaataaacgcaacagggaagtagcagaa |
173 |
Q |
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| T |
34410018 |
caatgagccaagtagggcgttgtagtgtgattaaaatattatcatcaacggtgtttccgaatatatagtatccaacaaatgcaactggaaggtagcaaat |
34409919 |
T |
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| Q |
174 |
tgcaactcctatgtatgcaaaaataactcctttccacatgggtttcttagaaggattctctggggttgatggcatagttgcttggatttcaagaaccacg |
273 |
Q |
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| T |
34409918 |
ggccactcctaaatatgcaacaacgactcctttccacattgctatcttggaaggctggtcaggagtagaaggtattgttgcttggatttcgagaactaca |
34409819 |
T |
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| Q |
274 |
ttgtgtcctgcatatgcaaatgctacatctccca |
307 |
Q |
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| T |
34409818 |
ttgtgacctgcataagaaaatgctacttctccca |
34409785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 296
Target Start/End: Original strand, 7971177 - 7971319
Alignment:
| Q |
154 |
gcaacagggaagtagcagaatgcaactcctatgtatgcaaaaataactcctttccacatgggtttcttagaaggattctctggggttgatggcatagttg |
253 |
Q |
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| T |
7971177 |
gcaacaggaaagtagcacaaagcaacaacaatgtatgcaacaataactcctttccacattggacccttagatggtttctcaggtgtagacggaattgttg |
7971276 |
T |
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| Q |
254 |
cttggatttcaagaaccacgttgtgtcctgcatatgcaaatgc |
296 |
Q |
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| T |
7971277 |
cttggatctccagcaccacgttgtgtccggcaaaggcaaatgc |
7971319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 293
Target Start/End: Original strand, 41381614 - 41381753
Alignment:
| Q |
154 |
gcaacagggaagtagcagaatgcaactcctatgtatgcaaaaataactcctttccacatgggtttcttagaaggattctctggggttgatggcatagttg |
253 |
Q |
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| T |
41381614 |
gcaacaggaaagtagcacaaagcaacaaccatgtaggcaaagataactcctttccacattggacccttagatggtttctcaggtgtagatgggattgtag |
41381713 |
T |
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| Q |
254 |
cttggatttcaagaaccacgttgtgtcctgcatatgcaaa |
293 |
Q |
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| T |
41381714 |
attgaatttccaacaccacattgtgtcctgcataggcaaa |
41381753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 14198148 - 14198212
Alignment:
| Q |
241 |
gatggcatagttgcttggatttcaagaaccacgttgtgtcctgcatatgcaaatgctacatctcc |
305 |
Q |
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| T |
14198148 |
gatggaattgttgcttggatttctaacaccacgttgtgtccggcataagcaaaagccacatctcc |
14198212 |
T |
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