View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1022_low_9 (Length: 310)

Name: NF1022_low_9
Description: NF1022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1022_low_9
NF1022_low_9
[»] chr2 (26 HSPs)
chr2 (13-251)||(25515495-25515731)
chr2 (13-122)||(45284450-45284559)
chr2 (13-122)||(45291813-45291922)
chr2 (13-122)||(29401290-29401399)
chr2 (13-122)||(20938174-20938283)
chr2 (13-122)||(36656036-36656145)
chr2 (13-122)||(15831406-15831515)
chr2 (13-113)||(10828711-10828810)
chr2 (13-122)||(3940415-3940524)
chr2 (13-122)||(43978798-43978907)
chr2 (13-122)||(5352243-5352352)
chr2 (13-122)||(30496633-30496742)
chr2 (13-122)||(43539424-43539533)
chr2 (70-121)||(31367308-31367359)
chr2 (145-232)||(25964980-25965068)
chr2 (77-122)||(45290911-45290956)
chr2 (70-131)||(25965089-25965150)
chr2 (70-232)||(45428758-45428921)
chr2 (145-232)||(45137249-45137337)
chr2 (70-121)||(35464347-35464398)
chr2 (261-291)||(15046237-15046267)
chr2 (70-124)||(17420843-17420897)
chr2 (143-232)||(42505576-42505666)
chr2 (70-131)||(7185298-7185359)
chr2 (145-232)||(21998358-21998446)
chr2 (145-232)||(28468809-28468897)
[»] chr8 (28 HSPs)
chr8 (13-250)||(45127900-45128136)
chr8 (13-251)||(35551816-35552052)
chr8 (13-122)||(20857563-20857672)
chr8 (14-122)||(34371553-34371661)
chr8 (13-122)||(5677348-5677457)
chr8 (13-122)||(23022007-23022116)
chr8 (13-122)||(25213-25322)
chr8 (13-122)||(1052802-1052911)
chr8 (13-122)||(22510818-22510927)
chr8 (13-122)||(26659724-26659833)
chr8 (33-122)||(2416422-2416511)
chr8 (70-131)||(24249752-24249813)
chr8 (145-245)||(22495062-22495164)
chr8 (193-251)||(39491257-39491315)
chr8 (145-232)||(25864756-25864844)
chr8 (145-232)||(39601871-39601959)
chr8 (103-232)||(42485314-42485442)
chr8 (70-131)||(39846729-39846790)
chr8 (103-232)||(489405-489533)
chr8 (145-232)||(40077067-40077155)
chr8 (145-232)||(45064409-45064497)
chr8 (70-231)||(34822760-34822924)
chr8 (145-204)||(39846806-39846865)
chr8 (70-124)||(2984398-2984452)
chr8 (70-124)||(25864682-25864736)
chr8 (145-232)||(35026655-35026743)
chr8 (145-232)||(41249890-41249978)
chr8 (145-232)||(43188217-43188305)
[»] chr7 (30 HSPs)
chr7 (13-251)||(556332-556568)
chr7 (13-122)||(5541226-5541334)
chr7 (13-122)||(46740233-46740343)
chr7 (13-122)||(17465407-17465516)
chr7 (13-122)||(17587698-17587807)
chr7 (13-122)||(48403635-48403744)
chr7 (13-122)||(45257266-45257375)
chr7 (36-122)||(16675051-16675137)
chr7 (36-122)||(17649419-17649505)
chr7 (13-122)||(9371072-9371181)
chr7 (13-122)||(35610102-35610211)
chr7 (13-122)||(41734441-41734550)
chr7 (13-122)||(41880766-41880877)
chr7 (145-232)||(17741274-17741362)
chr7 (251-305)||(39676242-39676296)
chr7 (142-251)||(14689871-14689982)
chr7 (70-235)||(34738529-34738696)
chr7 (70-232)||(36977764-36977928)
chr7 (70-232)||(39460696-39460858)
chr7 (145-234)||(47672902-47672992)
chr7 (70-232)||(47776501-47776664)
chr7 (145-232)||(9494623-9494711)
chr7 (70-126)||(17741201-17741257)
chr7 (145-232)||(27453436-27453524)
chr7 (145-232)||(37340472-37340560)
chr7 (145-230)||(10517151-10517237)
chr7 (70-123)||(47672828-47672881)
chr7 (103-131)||(15074004-15074032)
chr7 (51-83)||(16675141-16675173)
chr7 (51-83)||(17649509-17649541)
[»] chr6 (17 HSPs)
chr6 (13-251)||(24722079-24722315)
chr6 (13-122)||(3501447-3501556)
chr6 (19-123)||(26423270-26423374)
chr6 (13-122)||(22301458-22301567)
chr6 (13-122)||(27616993-27617102)
chr6 (13-122)||(6201426-6201535)
chr6 (13-122)||(11688393-11688502)
chr6 (13-122)||(30829338-30829447)
chr6 (142-251)||(3380922-3381033)
chr6 (145-232)||(21600762-21600847)
chr6 (145-213)||(14216404-14216473)
chr6 (79-131)||(7912694-7912746)
chr6 (77-120)||(29821778-29821821)
chr6 (70-121)||(30424177-30424228)
chr6 (70-124)||(6320306-6320360)
chr6 (148-185)||(7912641-7912678)
chr6 (145-233)||(24088601-24088690)
[»] chr4 (36 HSPs)
chr4 (25-251)||(41933321-41933545)
chr4 (13-122)||(50023229-50023338)
chr4 (13-122)||(3184234-3184343)
chr4 (13-122)||(50030347-50030456)
chr4 (13-122)||(50193756-50193865)
chr4 (70-251)||(11083759-11083940)
chr4 (13-122)||(3185778-3185887)
chr4 (13-122)||(9892954-9893063)
chr4 (13-121)||(44679761-44679869)
chr4 (13-122)||(30704301-30704410)
chr4 (13-131)||(49165303-49165420)
chr4 (13-122)||(6181476-6181585)
chr4 (13-122)||(31421975-31422084)
chr4 (19-122)||(49090698-49090801)
chr4 (25-131)||(55279941-55280047)
chr4 (142-251)||(14315523-14315634)
chr4 (142-243)||(46436402-46436504)
chr4 (142-251)||(14297274-14297385)
chr4 (13-96)||(11050209-11050292)
chr4 (86-243)||(10753196-10753352)
chr4 (86-243)||(10966965-10967121)
chr4 (13-73)||(41798681-41798741)
chr4 (142-232)||(21538275-21538366)
chr4 (70-232)||(51683368-51683532)
chr4 (145-232)||(8109561-8109649)
chr4 (145-232)||(55407608-55407696)
chr4 (70-232)||(21022631-21022793)
chr4 (103-232)||(1089360-1089488)
chr4 (103-232)||(1308890-1309018)
chr4 (71-122)||(4720112-4720163)
chr4 (75-122)||(41800694-41800741)
chr4 (145-204)||(50901678-50901737)
chr4 (143-232)||(50274902-50274992)
chr4 (145-232)||(40358097-40358185)
chr4 (142-232)||(30726554-30726645)
chr4 (70-124)||(55407530-55407584)
[»] scaffold0238 (1 HSPs)
scaffold0238 (15-224)||(18621-18828)
[»] chr3 (43 HSPs)
chr3 (13-122)||(17567750-17567859)
chr3 (13-122)||(20350922-20351031)
chr3 (13-122)||(41612645-41612754)
chr3 (17-122)||(2274604-2274709)
chr3 (13-122)||(29009137-29009246)
chr3 (13-122)||(34045654-34045763)
chr3 (13-122)||(42903876-42903985)
chr3 (13-122)||(49144148-49144257)
chr3 (13-122)||(50480470-50480579)
chr3 (13-122)||(52391082-52391191)
chr3 (25-122)||(2967623-2967720)
chr3 (17-122)||(16611355-16611460)
chr3 (17-122)||(22047793-22047898)
chr3 (13-122)||(46389239-46389348)
chr3 (13-122)||(46701711-46701820)
chr3 (13-122)||(54386401-54386510)
chr3 (31-122)||(4172084-4172175)
chr3 (245-305)||(6456605-6456665)
chr3 (245-305)||(6760183-6760243)
chr3 (31-122)||(4178082-4178173)
chr3 (13-68)||(36127768-36127823)
chr3 (56-122)||(36127686-36127752)
chr3 (70-232)||(42756321-42756483)
chr3 (145-232)||(30255819-30255907)
chr3 (70-122)||(31045336-31045388)
chr3 (145-232)||(44229883-44229971)
chr3 (149-232)||(48888904-48888988)
chr3 (145-232)||(49196264-49196352)
chr3 (70-232)||(3501635-3501799)
chr3 (70-230)||(3975876-3976036)
chr3 (70-232)||(48563110-48563273)
chr3 (145-232)||(596927-597015)
chr3 (70-124)||(597034-597088)
chr3 (145-230)||(4008140-4008226)
chr3 (70-124)||(20917760-20917814)
chr3 (70-124)||(20926722-20926776)
chr3 (145-230)||(42165333-42165419)
chr3 (70-124)||(44229989-44230043)
chr3 (70-131)||(48889011-48889073)
chr3 (70-124)||(50216621-50216675)
chr3 (145-233)||(51807136-51807225)
chr3 (145-232)||(50216697-50216785)
chr3 (145-232)||(50963122-50963210)
[»] chr1 (27 HSPs)
chr1 (13-122)||(21141305-21141414)
chr1 (13-122)||(97634-97743)
chr1 (13-122)||(38127169-38127278)
chr1 (13-122)||(13639709-13639818)
chr1 (13-122)||(19156293-19156402)
chr1 (13-122)||(50343655-50343764)
chr1 (18-122)||(2365514-2365618)
chr1 (13-122)||(26875935-26876044)
chr1 (13-122)||(3732067-3732176)
chr1 (13-122)||(8474063-8474172)
chr1 (13-74)||(47656196-47656257)
chr1 (52-122)||(470443-470513)
chr1 (145-232)||(17514526-17514614)
chr1 (70-234)||(35258616-35258779)
chr1 (70-233)||(52802297-52802461)
chr1 (145-232)||(23275925-23276013)
chr1 (70-232)||(51320882-51321044)
chr1 (103-232)||(30890230-30890358)
chr1 (70-124)||(11196156-11196210)
chr1 (145-232)||(11183346-11183434)
chr1 (70-122)||(25147571-25147622)
chr1 (145-232)||(29622241-29622329)
chr1 (145-213)||(47502503-47502571)
chr1 (70-124)||(23275847-23275901)
chr1 (70-124)||(45825152-45825206)
chr1 (103-131)||(19925011-19925039)
chr1 (145-232)||(22524295-22524383)
[»] chr5 (16 HSPs)
chr5 (13-122)||(5197251-5197360)
chr5 (13-122)||(19040803-19040912)
chr5 (13-122)||(30705414-30705523)
chr5 (13-122)||(27673339-27673448)
chr5 (70-243)||(8701967-8702139)
chr5 (142-243)||(40624737-40624839)
chr5 (142-232)||(17658491-17658582)
chr5 (72-245)||(20422098-20422267)
chr5 (70-232)||(19228415-19228577)
chr5 (70-204)||(42942229-42942363)
chr5 (145-235)||(7757489-7757580)
chr5 (70-232)||(512515-512677)
chr5 (145-232)||(38968263-38968351)
chr5 (70-232)||(14432-14594)
chr5 (103-232)||(28241575-28241703)
chr5 (145-232)||(8580322-8580410)
[»] scaffold0877 (1 HSPs)
scaffold0877 (17-131)||(4344-4457)
[»] scaffold0101 (1 HSPs)
scaffold0101 (103-232)||(40811-40939)
[»] scaffold0155 (1 HSPs)
scaffold0155 (70-204)||(8401-8533)
[»] scaffold0634 (1 HSPs)
scaffold0634 (145-232)||(7586-7674)
[»] scaffold0180 (1 HSPs)
scaffold0180 (145-230)||(15439-15525)
[»] scaffold0184 (1 HSPs)
scaffold0184 (145-232)||(18112-18200)
[»] scaffold0078 (1 HSPs)
scaffold0078 (145-232)||(54644-54732)
[»] scaffold0007 (1 HSPs)
scaffold0007 (77-113)||(246043-246079)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 25515495 - 25515731
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25515495 atactctaacatcattcaaacatcaactaaagcaactacattcaattataaactacatgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 25515594  T
Q  113 tgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgat 212  Q
    |||||||||||||||||||          ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25515595 tgcaaactactcaattttt--taaaaaaacttaacccaaacaaactaacattaagattacattgattaatgttacttacttgtgataatgtggagatgat 25515692  T
Q  213 tgcttgcaaatcgtgaaaatagaaattggaggaatttga 251  Q
    |||||||||||| |||||||  |||||||||||||||||    
T  25515693 tgcttgcaaatcatgaaaatgaaaattggaggaatttga 25515731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 45284559 - 45284450
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  45284559 atactctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaccaca 45284460  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  45284459 tgaaaactac 45284450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 45291922 - 45291813
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  45291922 atactctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaccaca 45291823  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  45291822 tgaaaactac 45291813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 29401290 - 29401399
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |    
T  29401290 atactctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcaatcataaaaaattcaattcctacatcaaccctaaccata 29401389  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  29401390 tgaaaactac 29401399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 20938283 - 20938174
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  20938283 atactctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 20938184  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  20938183 tgaaaactac 20938174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 36656036 - 36656145
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  36656036 atactctaacatcattcaatcatcaattaaagtcactacattcaattataaactacatgcaatcatcaaatattcaattcctacatcaaccctaaccaca 36656135  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  36656136 tgaaaactac 36656145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 15831515 - 15831406
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  15831515 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 15831416  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  15831415 tgaaaactac 15831406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 10828711 - 10828810
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  10828711 atactctaacatcattcaatcatcaattaaagcaactacattca-ttataaactacatgcaatcataaaaaattcaattcctacatcaaccctaaccaca 10828809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 3940415 - 3940524
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| ||||| |||||||||||||    
T  3940415 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcatcaaaaattcaattcatacattaaccctaaccaca 3940514  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  3940515 tgaaaactac 3940524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 43978907 - 43978798
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| ||||| |||||||||||||    
T  43978907 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcatcaaaaattcaattcatacattaaccctaaccaca 43978808  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  43978807 tgaaaactac 43978798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 5352352 - 5352243
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  5352352 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 5352253  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  5352252 tgaaaactac 5352243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 30496633 - 30496742
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  30496633 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 30496732  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  30496733 tgaaaactac 30496742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 43539424 - 43539533
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  43539424 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 43539523  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  43539524 tgaaaactac 43539533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 31367359 - 31367308
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaacta 121  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31367359 tgcaatcatcaaaatatcaattcctacatcaaccctaaccacatgcaaacta 31367308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 25965068 - 25964980
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||||||||||||||||||||| ||||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  25965068 aacctaaacaaactaacattatgattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 25964980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 45290956 - 45290911
Alignment:
Q  77 atcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||    
T  45290956 atcaaaaattcaattcctacatcaaccctaaccacatgaaaactac 45290911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 25965150 - 25965089
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaattttt 131  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| ||||||    
T  25965150 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctattttt 25965089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 45428921 - 45428758
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||| ||  || ||||||||||||||||| |||||||||| | ||||           | |||||||||||| ||||||||| ||    
T  45428921 tgcaatcatcaaattgtcattttttaaatcaaccctaaccacatacaaactactctaattttttttttaaaaatcaacctaaacaaattaacattaacat 45428822  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  45428821 taaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 45428758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 45137249 - 45137337
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||| ||  |||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| | ||||||||    
T  45137249 aacctaaacaaactaacactatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaatttgtgaaaat 45137337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 35464347 - 35464398
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaacta 121  Q
    ||||||||||| ||| ||||||| ||||| || |||||||||||||||||||    
T  35464347 tgcaatcatcagaatgtcaattcatacataaatcctaaccacatgcaaacta 35464398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Original strand, 15046237 - 15046267
Alignment:
Q  261 tattgtgcaggatgtttcttcctttgctgaa 291  Q
    |||||||||||||||||||||||||||||||    
T  15046237 tattgtgcaggatgtttcttcctttgctgaa 15046267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 17420897 - 17420843
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  17420897 tgcaatcatcaaattctcaattttgaaatcaaccctaaccacatgcaaactactc 17420843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 42505576 - 42505666
Alignment:
Q  143 ttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||||| |||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  42505576 ttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 42505666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 7185359 - 7185298
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaattttt 131  Q
    ||||||||||||| | ||||||   | ||||||||||||||||| |||||||||| ||||||    
T  7185359 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactactctattttt 7185298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 21998446 - 21998358
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||  |  ||| |||||||||| ||||||||||    
T  21998446 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtacaattgatttgcttgcaattcgtgaaaat 21998358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 28468897 - 28468809
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||  | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  28468897 aacctaaacaaattaacattaacattcaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 28468809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 45128136 - 45127900
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  45128136 atactctaacatcattcaaacatcaattaaagcaacgacattcaattataaactacatgcaatcatcaaaatttcaattcctacatcaaccataaccaca 45128037  T
Q  113 tgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgat 212  Q
    |||||||||||||||||||          |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45128036 tgcaaactactcaattttt-ttaaaaaaacttaacctaaacaaactaacattaagattaaattgattaatgctacttacttgtgataatgtggagatgat 45127938  T
Q  213 tgcttgcaaatcgtgaaaatagaaattggaggaatttg 250  Q
    || ||||||||| |||||||||||||| ||||||||||    
T  45127937 tggttgcaaatcatgaaaatagaaatttgaggaatttg 45127900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 35552052 - 35551816
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||    
T  35552052 atactctaacatcattcaaacatcaattaaaacaactacattcaattataaactacatgcaataataaaaaattcaattcctacatcaaccctaaccaca 35551953  T
Q  113 tgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgat 212  Q
    || ||||||||||||||||          ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||    
T  35551952 tgaaaactactcaattttt--taaaaaaacttaacctaaacaaactaacattaacattgcattgattaatgctacttacatgtgataatgtggagatgat 35551855  T
Q  213 tgcttgcaaatcgtgaaaatagaaattggaggaatttga 251  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  35551854 tgcttgcaaatcttgaaaatggaaattggaggaatttga 35551816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 20857672 - 20857563
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  20857672 atactctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccttaaccaca 20857573  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  20857572 tgaaaactac 20857563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 34371553 - 34371661
Alignment:
Q  14 tactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacat 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||| |||||| ||||||||||    
T  34371553 tactctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcactcataaaaaattcaattcctaaatcaactctaaccacat 34371652  T
Q  114 gcaaactac 122  Q
    | |||||||    
T  34371653 gaaaactac 34371661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 5677457 - 5677348
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||| ||||||||||||||||| ||||||||   ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5677457 atactctaacaccattcaaacatcaattatagcaactattgtcatttacaaactacatgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 5677358  T
Q  113 tgcaaactac 122  Q
    |||| |||||    
T  5677357 tgcagactac 5677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 23022007 - 23022116
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| ||||  |||||||||||||||||||||||||||    
T  23022007 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaagtcaattcctacatcaaccctaaccaca 23022106  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  23022107 tgaaaactac 23022116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 25213 - 25322
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  25213 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 25312  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  25313 tgaaaactac 25322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 1052911 - 1052802
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  1052911 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcttacattaaccctaaccaca 1052812  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  1052811 tgaaaactac 1052802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 22510927 - 22510818
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  22510927 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 22510828  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  22510827 tgaaaactac 22510818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 26659833 - 26659724
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  26659833 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 26659734  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  26659733 tgaaaactac 26659724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 2416511 - 2416422
Alignment:
Q  33 catcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||| |||||||    
T  2416511 catcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccacatgaaaactac 2416422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 24249813 - 24249752
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaattttt 131  Q
    ||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||    
T  24249813 tgcaatcatcaaattgtcaattcctatatcaaccctaaccacatgcaaactactcaattttt 24249752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 22495164 - 22495062
Alignment:
Q  145 aacctaaacaaactaacattaagattacat-tgattaatgctacttacttgtgataatgtggagatgattg-cttgcaaatcgtgaaaatagaaattgga 242  Q
    |||||| |||||||||||||| |||||||  ||  |||  || ||||||||||||||||||||||||||||  ||||||||||||||||  |||||||||    
T  22495164 aacctacacaaactaacattatgattacaagtgtgtaaaacttcttacttgtgataatgtggagatgattgagttgcaaatcgtgaaaacggaaattgga 22495065  T
Q  243 gga 245  Q
    |||    
T  22495064 gga 22495062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 39491315 - 39491257
Alignment:
Q  193 tgtgataatgtggagatgattgcttgcaaatcgtgaaaatagaaattggaggaatttga 251  Q
    |||| ||||||||||||||||||||||| |||||||||||  |||||||||||||||||    
T  39491315 tgtggtaatgtggagatgattgcttgcagatcgtgaaaatgaaaattggaggaatttga 39491257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 25864756 - 25864844
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | |||||||| | ||||||||||||||||||| || ||| ||| |||||| ||||||||||    
T  25864756 aacctaaacaaactaacattatcattaaaatgattaatacaacttacttgtgataatgtgtagttgatttgattgcaattcgtgaaaat 25864844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 39601959 - 39601871
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  39601959 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 39601871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 42485314 - 42485442
Alignment:
Q  103 cctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatg 202  Q
    |||||||||||||||||||||||||||||          |||||| |||||||| ||||||||| |||| | ||||| |  | |||||||||||||||||    
T  42485314 cctaaccacatgcaaactactcaatttttttaaaaaa--cttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatg 42485411  T
Q  203 tggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || |  ||| |||||||||| ||||||||||    
T  42485412 tgcacttgatttgcttgcaattcgtgaaaat 42485442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 39846729 - 39846790
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaattttt 131  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| ||||||    
T  39846729 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctattttt 39846790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 489405 - 489533
Alignment:
Q  103 cctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatg 202  Q
    |||||||||||||||||||||||||||||           ||||| |||||||| ||||||||| |||| | ||||| |  | |||||||||||||||||    
T  489405 cctaaccacatgcaaactactcaattttttttaaaaat--ttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatg 489502  T
Q  203 tggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || |  ||| |||||||||| ||||||||||    
T  489503 tgcacttgatttgcttgcaattcgtgaaaat 489533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 40077067 - 40077155
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | |||||||| |||||||||| |  ||| |||||||||| ||||||||||    
T  40077067 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttctgataatgtgcacttgatttgcttgcaattcgtgaaaat 40077155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 45064497 - 45064409
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  45064497 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 45064409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 34822760 - 34822924
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| | ||||           | |||||||||||||||||||||  ||    
T  34822760 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaaataaacctaaacaaactaacattatcat 34822859  T
Q  170 tacattgattaatgctact--tacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaa 231  Q
    || | ||||| || | |||  |||||||||||||||| || | | |||||||||| |||||||||    
T  34822860 taaaatgattgatacaacttatacttgtgataatgtgcagttaatttgcttgcaattcgtgaaaa 34822924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 39846806 - 39846865
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtg 204  Q
    |||||||||||||||||||||  |||| | ||||| || | |||||||||||||||||||    
T  39846806 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtg 39846865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 2984452 - 2984398
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  2984452 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactc 2984398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 25864682 - 25864736
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  25864682 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactc 25864736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 35026743 - 35026655
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||  |||| | ||||| |  | ||||||||||||||||||| || | | |||||||||| ||||||||||    
T  35026743 aacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgtagttaatttgcttgcaattcgtgaaaat 35026655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 41249890 - 41249978
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||  |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  41249890 aacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 41249978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 43188305 - 43188217
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | |||||||||||| ||| || || ||| |||||||||| || |||||||    
T  43188305 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgacaatatgcagttgatttgcttgcaattcttgaaaat 43188217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 556332 - 556568
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||    
T  556332 atactctaacatcatccaatcatcaattaaagcaactatattcaattataaactacatgcaatcatcaaaaattcaattcctacataaaccttaaccaca 556431  T
Q  113 tgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgat 212  Q
    || ||||||||||||||||          ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  556432 tgaaaactactcaatttttttaaaaaa--cttaacctaaacaaactaacattaacattacattgattaatgctacttacctgtgataatgtggagatgat 556529  T
Q  213 tgcttgcaaatcgtgaaaatagaaattggaggaatttga 251  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  556530 tgcttgcaaatcgtgaaaatggaaattggagaaatttga 556568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 5541226 - 5541334
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  5541226 atactctaacatcattcaatcatcaattaaagccactacattcaattataaactacatgaaatcatcaaaa-ttcaattcctacatcaaccctaaccaca 5541324  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  5541325 tgaaaactac 5541334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 46740233 - 46740343
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcat-caaaatttcaattcctacatcaaccctaaccac 111  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||  |||| |||||||||||||||||||||||||||    
T  46740233 atactctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcaatcataaaaaaattcaattcctacatcaaccctaaccac 46740332  T
Q  112 atgcaaactac 122  Q
    ||| |||||||    
T  46740333 atgaaaactac 46740343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 17465407 - 17465516
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  17465407 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 17465506  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  17465507 tgaaaactac 17465516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 17587807 - 17587698
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  17587807 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 17587708  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  17587707 tgaaaactac 17587698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 48403744 - 48403635
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  48403744 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 48403645  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  48403644 tgaaaactac 48403635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 45257375 - 45257266
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||||||||||||||||||  ||||||||||||||||||||||| |||||||||||  ||| |||| |||| ||||||||||||||||||||||||||||    
T  45257375 atactctaacatcattcaattatcaattaaagcaactacattcagttataaactacaagcactcataaaaaattcaattcctacatcaaccctaaccaca 45257276  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  45257275 tgaaaactac 45257266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 16675137 - 16675051
Alignment:
Q  36 caattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||    
T  16675137 caattaaagcaactacattcaattataaactacatgcaatcatcaaaagtccaattcctacatcaaccctaaccacatgaaaactac 16675051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 17649505 - 17649419
Alignment:
Q  36 caattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||    
T  17649505 caattaaagcaactacattcaattataaactacatgcaatcatcaaaagtccaattcctacatcaaccctaaccacatgaaaactac 17649419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 9371072 - 9371181
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  9371072 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 9371171  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  9371172 tgaaaactac 9371181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 35610102 - 35610211
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  35610102 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 35610201  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  35610202 tgaaaactac 35610211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 41734550 - 41734441
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||| |||| ||||| ||||||||||||||||||| |||||||| |||||| ||| ||||||||||||| |||||||||| |||||||||||||||||     
T  41734550 atactataacgtcattgaaacatcaattaaagcaacaacattcaactataaaatacatgcaatcatcaaattttcaattccaacatcaaccctaaccacg 41734451  T
Q  113 tgcaaactac 122  Q
    ||||||||||    
T  41734450 tgcaaactac 41734441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 41880877 - 41880766
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattc--ctacatcaaccctaacca 110  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||  |||||||||| |||||||    
T  41880877 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcagctacatcaactctaacca 41880778  T
Q  111 catgcaaactac 122  Q
    |||| |||||||    
T  41880777 catgaaaactac 41880766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 17741274 - 17741362
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaat 232  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||| ||||| || ||||||||||    
T  17741274 aacctaaacaaactaacattaagattacaatgactaatgctacttacttttgataatgtggggatgattggcttgtaattcgtgaaaat 17741362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 39676242 - 39676296
Alignment:
Q  251 atgttgttagtattgtgcaggatgtttcttcctttgctgaaaatgtgtccatgat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39676242 atgttgttagtattgtgcaggatgtttcttcctttgctgaaaatgtatccatgat 39676296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 14689871 - 14689982
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgattg-cttgcaaatcgtgaaaatagaaattg 240  Q
    ||||||||||||||| ||||||||  ||| || ||||||||| ||||||||||||||||||||  ||||| || ||||||| |||||||||| ||| |||    
T  14689871 cttaacctaaacaaattaacattaccattgcaatgattaatggtacttacttgtgataatgtgaggatgaatgtcttgcaattcgtgaaaatggaatttg 14689970  T
Q  241 gag-gaatttga 251  Q
    ||| ||||||||    
T  14689971 gagagaatttga 14689982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 34738696 - 34738529
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| |||||||           | |||||||||||| ||||||||  |    
T  34738696 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttttaaaaatcaacctaaacaaattaacattatca 34738597  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaataga 235  Q
    ||| | ||||| |  | ||||||||||||||||||| |||||| |||||||||| |||||||||||||    
T  34738596 ttaaaatgattgacacaacttacttgtgataatgtgcagatgatttgcttgcaattcgtgaaaataga 34738529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 36977928 - 36977764
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactca-atttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||| ||||||           | |||||||||||||||||||||  |    
T  36977928 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactcagattttttttaaaaaaaataaacctaaacaaactaacattatca 36977829  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||| | ||||| || | ||||||||||||||||||  || ||| |||||||||| ||||||||||    
T  36977828 ttaaaatgattgatacaacttacttgtgataatgtacagttgatttgcttgcaattcgtgaaaat 36977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 39460858 - 39460696
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| |||||||           | |||||||||||||||||||||  |    
T  39460858 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaaa--taaacctaaacaaactaacattatca 39460761  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  39460760 ttaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 39460696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 47672902 - 47672992
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaatag 234  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||||    
T  47672902 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatag 47672992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 47776664 - 47776501
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| | ||||           | |||||||||||||||||||||  ||    
T  47776664 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaaataaacctaaacaaactaacattatcat 47776565  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || | ||||| || |  |||||||||||||||||| || ||| |||||||||| | ||||||||    
T  47776564 taaaatgattgatacaccttacttgtgataatgtgcagttgatttgcttgcaatttgtgaaaat 47776501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 9494623 - 9494711
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| || ||| ||||||| || ||||||||||    
T  9494623 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttggaattcgtgaaaat 9494711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 17741201 - 17741257
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaa 126  Q
    ||||||| ||||||| ||||||| | ||| |||||||||||||||||||||||||||    
T  17741201 tgcaatcttcaaaatgtcaattcattcataaaccctaaccacatgcaaactactcaa 17741257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 27453436 - 27453524
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| |  ||| |||||||||| | ||||||||    
T  27453436 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcaattgatttgcttgcaatttgtgaaaat 27453524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 37340560 - 37340472
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||   ||| | ||||| || | |||||||||||||||||||  | ||| |||||||||| ||||||||||    
T  37340560 aacctaaacaaactaacattattgttaaaatgattgatacaacttacttgtgataatgtgctgttgatttgcttgcaattcgtgaaaat 37340472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 10517237 - 10517151
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaa 230  Q
    |||||||||||| |||||||| ||||| | ||||| |  |  |||||||||||||||||| || ||| |||||||||| ||||||||    
T  10517237 aacctaaacaaattaacattatgattaaaatgattgacacagcttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa 10517151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 47672828 - 47672881
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactact 123  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||    
T  47672828 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactact 47672881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Original strand, 15074004 - 15074032
Alignment:
Q  103 cctaaccacatgcaaactactcaattttt 131  Q
    |||||||||||||||||||||||||||||    
T  15074004 cctaaccacatgcaaactactcaattttt 15074032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 16675173 - 16675141
Alignment:
Q  51 cattcaattataaactacctgcaatcatcaaaa 83  Q
    |||||||||||||||||| ||||||||||||||    
T  16675173 cattcaattataaactacatgcaatcatcaaaa 16675141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 17649541 - 17649509
Alignment:
Q  51 cattcaattataaactacctgcaatcatcaaaa 83  Q
    |||||||||||||||||| ||||||||||||||    
T  17649541 cattcaattataaactacatgcaatcatcaaaa 17649509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 24722315 - 24722079
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  24722315 atactctaacatcattcaaacatcaattaaagacactacattcaattataaactacatgcaataatcaaaaattcaattcctacatcaaccctaaccaca 24722216  T
Q  113 tgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgat 212  Q
    || ||||||||||||||||          |||||| |||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||    
T  24722215 tgaaaactactcaattttt--tttaaaaacttaacataaacaaactaacattaacattacattgattaatgctatttacctgtggtaatgtggagatgat 24722118  T
Q  213 tgcttgcaaatcgtgaaaatagaaattggaggaatttga 251  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  24722117 tgcttgcaaatcgtgaaaatggaaattggaggaatttga 24722079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 3501556 - 3501447
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  3501556 atactctaacatcattcaatcatcaattaaagccactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaacaca 3501457  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  3501456 tgaaaactac 3501447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 26423374 - 26423270
Alignment:
Q  19 taacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaa 118  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |||    
T  26423374 taacatcattcaatcatcaattaaagccactacattcaattataaactacatgcaatcataaaaaattcaattcctacatcaaccctaaccacatgaaaa 26423275  T
Q  119 ctact 123  Q
    |||||    
T  26423274 ctact 26423270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 22301567 - 22301458
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  22301567 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 22301468  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  22301467 tgaaaactac 22301458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 27617102 - 27616993
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  27617102 ataccctaacaccattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 27617003  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  27617002 tgaaaactac 27616993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 6201535 - 6201426
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  6201535 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 6201436  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  6201435 tgaaaactac 6201426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 11688502 - 11688393
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  11688502 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 11688403  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  11688402 tgaaaactac 11688393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 30829338 - 30829447
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  30829338 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 30829437  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  30829438 tgaaaactac 30829447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 3381033 - 3380922
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaatagaaattg 240  Q
    ||||||||||||||| ||||||||| ||| || ||||||||| ||||||||||||||||||||| ||||||| |||| |||  ||||||||| ||| |||    
T  3381033 cttaacctaaacaaattaacattaaaattgcaatgattaatggtacttacttgtgataatgtggggatgattggcttacaatccgtgaaaatggaatttg 3380934  T
Q  241 gag-gaatttga 251  Q
    ||| ||||||||    
T  3380933 gagagaatttga 3380922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 21600847 - 21600762
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||   ||||| |||||||||  |||||||||||||||||||| ||||||| | |||||||||||||||||    
T  21600847 aacctaaacaaactaacatta---ttacaatgattaatgtgacttacttgtgataatgtggcgatgattggtttgcaaatcgtgaaaat 21600762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 14216473 - 14216404
Alignment:
Q  145 aacctaaacaaactaacattaagattacat-tgattaatgctacttacttgtgataatgtggagatgatt 213  Q
    |||||| |||||||||||||| ||||||   |||||||| ||||||||||||||||| ||||||||||||    
T  14216473 aacctacacaaactaacattatgattacggatgattaatactacttacttgtgataaagtggagatgatt 14216404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 7912746 - 7912694
Alignment:
Q  79 caaaatttcaattcctacatcaaccctaaccacatgcaaactactcaattttt 131  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||| |||||||    
T  7912746 caaaagttcaatttcaacatcaaccctaaccacatgcaaactacttaattttt 7912694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 29821778 - 29821821
Alignment:
Q  77 atcaaaatttcaattcctacatcaaccctaaccacatgcaaact 120  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||    
T  29821778 atcaaaatgtcaattcctagatcaaccctaaccacatacaaact 29821821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 30424177 - 30424228
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaacta 121  Q
    ||||||||||||||| ||||||| ||||| ||| ||||||||||||| ||||    
T  30424177 tgcaatcatcaaaatgtcaattcatacataaactctaaccacatgcacacta 30424228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 6320306 - 6320360
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  6320306 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactc 6320360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 7912678 - 7912641
Alignment:
Q  148 ctaaacaaactaacattaagattacattgattaatgct 185  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  7912678 ctaaacaaactaacattatgattacaatgattaatgct 7912641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 24088601 - 24088690
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaata 233  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||| |||||||||| ||  | ||| |||||||||| |||||||||||    
T  24088601 aacctaaacaaactaacattatcattaaaatgattgatacaacttatttgtgataatttgcggttgatttgcttgcaattcgtgaaaata 24088690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 41933321 - 41933545
Alignment:
Q  25 cattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||||||| | |||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  41933321 cattcaaacatcaattacaacaactacattcatttataaactacatgcaatcatcaaaatatcaattcctacatcaaccctatccacatgcaaactactc 41933420  T
Q  125 aatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgattgcttgcaaatc 224  Q
    |||||||          ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41933421 aattttttaaaaaaa--cttaacctaaacaaactaacattaagattacattgattaattctacttacttgtgataatgtggagatgattgcttgcaaatc 41933518  T
Q  225 gtgaaaatagaaattggaggaatttga 251  Q
    ||||||||  |||||||||||||||||    
T  41933519 gtgaaaatgaaaattggaggaatttga 41933545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 50023229 - 50023338
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  50023229 atactctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaccaca 50023328  T
Q  113 tgcaaactac 122  Q
    |  |||||||    
T  50023329 taaaaactac 50023338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 3184343 - 3184234
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  3184343 atactctaacatcattcaatcatcaattaaagccactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaacaca 3184244  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  3184243 tgaaaactac 3184234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 50030347 - 50030456
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  50030347 atactctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcagccctaaccaca 50030446  T
Q  113 tgcaaactac 122  Q
    |  |||||||    
T  50030447 taaaaactac 50030456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 50193865 - 50193756
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||    
T  50193865 atactctaacattattcaatcatcaattaaagcaactacattcaattataaattacatgcaatcatcaaaaattcaattcctacatcaaccctaacccca 50193766  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  50193765 tgaaaactac 50193756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 11083759 - 11083940
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    |||||| |||||| | ||||||| | ||| ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  11083759 tgcaatgatcaaattgtcaattcattcataaaccctaaccacatgcaaactactcaattttttttcaaaa--cttaacctaaacaaactaacattaagat 11083856  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaatagaaattggag-gaatttga 251  Q
    | || ||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| ||| |||||| ||||||||    
T  11083857 tgcaatgattaatggtacttacttgtgataatgtggggatgattggcttgcaattcgtgaaaatggaatttggagagaatttga 11083940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 3185778 - 3185887
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||    
T  3185778 atactctaacatcattcaatcatcaattaaagtcactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccataaacaca 3185877  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  3185878 tgaaaactac 3185887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 9892954 - 9893063
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  9892954 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 9893053  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  9893054 tgaaaactac 9893063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 44679761 - 44679869
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||| ||||  |||||||||||||||||||||||||||    
T  44679761 atactctaacatcattcaatcatcaatcaaagcaactacattcaattatgaactacatgcaatcataaaaaaatcaattcctacatcaaccctaaccaca 44679860  T
Q  113 tgcaaacta 121  Q
    || ||||||    
T  44679861 tgaaaacta 44679869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 30704410 - 30704301
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||| ||| |||||||||| || |||||||||| |||||||||||||||||     
T  30704410 atactctaacatcattcaaacatcaattaaagcaacaacgttcaactataaaatacatgcaatcatcgaattttcaattccaacatcaaccctaaccacg 30704311  T
Q  113 tgcaaactac 122  Q
    ||||||||||    
T  30704310 tgcaaactac 30704301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 49165420 - 49165303
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  49165420 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 49165321  T
Q  113 tgcaaactactcaattttt 131  Q
    || ||||||| ||||||||    
T  49165320 tgaaaactac-caattttt 49165303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 6181476 - 6181585
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  6181476 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 6181575  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  6181576 tgaaaactac 6181585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 31422084 - 31421975
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||| |||| ||||  |||||||||||||||||||||||||||    
T  31422084 ataccctaacatcattcaatcatcaattaaaccaactgcattcaattataaactacatgcactcataaaaaagtcaattcctacatcaaccctaaccaca 31421985  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  31421984 tgaaaactac 31421975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 49090801 - 49090698
Alignment:
Q  19 taacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaa 118  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| ||||||||||||||| |||    
T  49090801 taacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccacatgaaaa 49090702  T
Q  119 ctac 122  Q
    ||||    
T  49090701 ctac 49090698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 55279941 - 55280047
Alignment:
Q  25 cattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||||||| | |||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||| ||||||||||| ||||||      
T  55279941 cattcaaacatcaattacaacaactacattcatttataaactacatacaatcatcaaaatgtcaattcctacatcaaccttaaccacatgcgaactacca 55280040  T
Q  125 aattttt 131  Q
    |||||||    
T  55280041 aattttt 55280047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 14315634 - 14315523
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaatagaaattg 240  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||||| ||||||| |||||||| |||||||||| ||| |||    
T  14315634 cttaacctaaacaaactaacattaagattgcaatgattaatggtacttacttgggataatgtggggatgattggcttgcaattcgtgaaaatggaatttg 14315535  T
Q  241 gag-gaatttga 251  Q
    ||| ||||||||    
T  14315534 gagagaatttga 14315523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 46436504 - 46436402
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaatagaaattg 240  Q
    ||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| ||| |||    
T  46436504 cttaacctaaacaaactaacattaacattgcaatgattaatggtacttacttgtgataatgtggggatgattggcttgcaattcgtgaaaatggaatttg 46436405  T
Q  241 gag 243  Q
    |||    
T  46436404 gag 46436402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 14297385 - 14297274
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaatagaaattg 240  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||||| ||||||| |||||||| ||||||| || ||| |||    
T  14297385 cttaacctaaacaaactaacattaagattgcaatgattaatggtacttacttgggataatgtggggatgattggcttgcaattcgtgaacatggaatttg 14297286  T
Q  241 gag-gaatttga 251  Q
    ||| ||||||||    
T  14297285 gagagaatttga 14297274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 11050209 - 11050292
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctac 96  Q
    ||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||| ||||||||||||||||| || ||||||    
T  11050209 atactctaacatcattcaaacataaattaaaacaactacattaaattataaattacatgcaatcatcaaaattttaaatcctac 11050292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 10753196 - 10753352
Alignment:
Q  86 tcaattcctacatcaaccctaaccacatgcaaactactca-atttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgc 184  Q
    ||||||| | ||| |||||||||||||||||||||||||| ||||||          ||||| |||||||||||||||||| ||||| | ||||| ||||    
T  10753196 tcaattcattcataaaccctaaccacatgcaaactactcatattttttaaaaaa---cttaaactaaacaaactaacattatgattaaaatgattgatgc 10753292  T
Q  185 tacttacttgtgataatgtggagatgattg-cttgcaaatcgtgaaaatagaaattggag 243  Q
     |||||||||| ||||||||| |||||  | ||||||| |||||||||| ||| ||||||    
T  10753293 aacttacttgtcataatgtggggatgagagacttgcaattcgtgaaaatggaatttggag 10753352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 10966965 - 10967121
Alignment:
Q  86 tcaattcctacatcaaccctaaccacatgcaaactactca-atttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgc 184  Q
    ||||||| | ||| |||||||||||||||||||||||||| ||||||          ||||| |||||||||||||||||| ||||| | ||||| ||||    
T  10966965 tcaattcattcataaaccctaaccacatgcaaactactcatattttttaaaaaa---cttaaactaaacaaactaacattatgattaaaatgattgatgc 10967061  T
Q  185 tacttacttgtgataatgtggagatgattg-cttgcaaatcgtgaaaatagaaattggag 243  Q
     |||||||||| ||||||||| |||||  | ||||||| |||||||||| ||| ||||||    
T  10967062 aacttacttgtcataatgtggggatgagagacttgcaattcgtgaaaatggaatttggag 10967121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 41798681 - 41798741
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgca 73  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||    
T  41798681 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgca 41798741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 21538275 - 21538366
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||||| |||||||||||||||||| ||||| | ||||| |||| |||||||||||||||||||  | ||| |||||||||| ||||||||||    
T  21538275 cttaaactaaacaaactaacattatgattaaaatgattgatgcaacttacttgtgataatgtgtggttgatttgcttgcaattcgtgaaaat 21538366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 51683532 - 51683368
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| |||||||           | |||||||||||||||||||||  |    
T  51683532 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttttaaaaataaacctaaacaaactaacattatca 51683433  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||| | ||||| ||   ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  51683432 ttaaaatgattgatataacttacttgtgataatgtgtagttgatttgcttgcaattcgtgaaaat 51683368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 8109649 - 8109561
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  8109649 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 8109561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 55407608 - 55407696
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  55407608 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 55407696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 21022631 - 21022793
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | ||||||||||||||||| |||||||||||||||||           | |||||||||||| ||||||||| ||    
T  21022631 tgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactactcaatttttttaaaaaaaa-tcaacctaaacaaattaacattaacat 21022729  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  21022730 taaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 21022793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 1089360 - 1089488
Alignment:
Q  103 cctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatg 202  Q
    |||||||||||||||||||||||||||||          |||||| |||||||| ||||||||| |||| | ||||| |  | |||||||||||||||||    
T  1089360 cctaaccacatgcaaactactcaattttttaaaaaaa--cttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatg 1089457  T
Q  203 tggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || |  ||| |||||||||| ||||||||||    
T  1089458 tgcacttgatttgcttgcaattcgtgaaaat 1089488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 1308890 - 1309018
Alignment:
Q  103 cctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatg 202  Q
    |||||||||||||||||||||||||||||          |||||| |||||||| ||||||||| |||| | ||||| |  | |||||||||||||||||    
T  1308890 cctaaccacatgcaaactactcaatttttttaaaaaa--cttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatg 1308987  T
Q  203 tggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || |  ||| |||||||||| ||||||||||    
T  1308988 tgcacttgatttgcttgcaattcgtgaaaat 1309018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 4720112 - 4720163
Alignment:
Q  71 gcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    |||||||||||||| ||||||| ||| | |||||||||||||||||||||||    
T  4720112 gcaatcatcaaaatgtcaattcttacgtaaaccctaaccacatgcaaactac 4720163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 41800694 - 41800741
Alignment:
Q  75 tcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    |||| |||| |||||||||||||||||||||||||||||| |||||||    
T  41800694 tcataaaaaattcaattcctacatcaaccctaaccacatgaaaactac 41800741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 50901737 - 50901678
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtg 204  Q
    |||||||||||||||||||||  |||| | ||||| |||| |||||||||||||||||||    
T  50901737 aacctaaacaaactaacattatcattaaaatgattgatgcaacttacttgtgataatgtg 50901678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 50274992 - 50274902
Alignment:
Q  143 ttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||| ||||||||  |||| | ||||| |  | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  50274992 ttaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 50274902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 40358097 - 40358185
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  40358097 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 40358185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 30726554 - 30726645
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||| |||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  30726554 cttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 30726645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 55407530 - 55407584
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  55407530 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactc 55407584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 18621 - 18828
Alignment:
Q  15 actctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatg 114  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  18621 actctaacatgattcaaaaatcaattaaagcaactacattcaattataaactacatgcaataatcaaaatttcaattcctacatcaaccctaaccacatg 18720  T
Q  115 caaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgattg 214  Q
     ||||||||||||||||          ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  18721 aaaactactcaattttt--ttaaaaaacttaacctaaacaaactaacattaacattacattgattaatgctacttaccagtgataatgtggagatgattg 18818  T
Q  215 cttgcaaatc 224  Q
    |||| |||||    
T  18819 cttgtaaatc 18828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 17567750 - 17567859
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  17567750 atactctaacatcattcaatcatcaattaaagtaactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaccaca 17567849  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  17567850 tgaaaactac 17567859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 20351031 - 20350922
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  20351031 atactctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcaatcataaaaaattcaattcctacatcaaccctaaccaca 20350932  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  20350931 tgaaaactac 20350922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 41612754 - 41612645
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||||||    
T  41612754 atactctaacatcattcaatcatcaattaaagtaactacattcaattataaactacatgcaattatcaaaaattcaattcctacattaaccctaaccaca 41612655  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  41612654 tgaaaactac 41612645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 2274604 - 2274709
Alignment:
Q  17 tctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgca 116  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||| |    
T  2274604 tctaacatcattcaatcatcaattaaagcaactgcattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccacatgaa 2274703  T
Q  117 aactac 122  Q
    ||||||    
T  2274704 aactac 2274709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 29009246 - 29009137
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  29009246 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 29009147  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  29009146 tgaaaactac 29009137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 34045763 - 34045654
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| ||||| |||||||||||||    
T  34045763 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcatcaaaaattcaattcatacattaaccctaaccaca 34045664  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  34045663 tgaaaactac 34045654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 42903876 - 42903985
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| ||||  |||||||||||||||||||||||||||    
T  42903876 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaaatcaattcctacatcaaccctaaccaca 42903975  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  42903976 tgaaaactac 42903985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 49144148 - 49144257
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||| ||||| |||||||||||||    
T  49144148 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcatcaaaaattcaattcatacattaaccctaaccaca 49144247  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  49144248 tgaaaactac 49144257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 50480470 - 50480579
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| ||||  |||||||||||||||||||||||||||    
T  50480470 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaagtcaattcctacatcaaccctaaccaca 50480569  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  50480570 tgaaaactac 50480579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 52391082 - 52391191
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  52391082 atacactaacatcattcaatcatcaattaaaacaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 52391181  T
Q  113 tgcaaactac 122  Q
    |  |||||||    
T  52391182 tcaaaactac 52391191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 2967623 - 2967720
Alignment:
Q  25 cattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||| |||||||    
T  2967623 cattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccacatgaaaactac 2967720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 16611460 - 16611355
Alignment:
Q  17 tctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgca 116  Q
    |||||||| |||||| |||| |||||| |||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||| |    
T  16611460 tctaacattattcaatcatcgattaaaacaactacattcaattataaactacttgcaatcataaaaaattcaattccgacatcaaccctaaccacatgaa 16611361  T
Q  117 aactac 122  Q
    ||||||    
T  16611360 aactac 16611355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 22047793 - 22047898
Alignment:
Q  17 tctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgca 116  Q
    |||||||| |||||| |||| |||||| |||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||| |    
T  22047793 tctaacattattcaatcatcgattaaaacaactacattcaattataaactacttgcaatcataaaaaattcaattccgacatcaaccctaaccacatgaa 22047892  T
Q  117 aactac 122  Q
    ||||||    
T  22047893 aactac 22047898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 46389348 - 46389239
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  46389348 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 46389249  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  46389248 tgaaaactac 46389239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 46701711 - 46701820
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  46701711 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 46701810  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  46701811 tgaaaactac 46701820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 54386510 - 54386401
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  54386510 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 54386411  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  54386410 tgaaaactac 54386401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 4172175 - 4172084
Alignment:
Q  31 aacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||| | || ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  4172175 aacatcaattacaacagctacattcatttataaactacatgcaatcatcaaaatatcaattcctacatcaaccctaacaacatgcaaactac 4172084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 6456605 - 6456665
Alignment:
Q  245 aatttgatgttgttagtattgtgcaggatgtttcttcctttgctgaaaatgtgtccatgat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6456605 aatttgatgttgttagtattgtgcaggatgtttcttcctttgctgaaaatgtgtccatgat 6456665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 6760243 - 6760183
Alignment:
Q  245 aatttgatgttgttagtattgtgcaggatgtttcttcctttgctgaaaatgtgtccatgat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6760243 aatttgatgttgttagtattgtgcaggatgtttcttcctttgctgaaaatgtgtccatgat 6760183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 4178173 - 4178082
Alignment:
Q  31 aacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||| | || ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  4178173 aacatcaattacaacagctacattcatttataaactacatgcaatcatcaaaatatcaattcctacatcaaccctaacagcatgcaaactac 4178082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 36127823 - 36127768
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactac 68  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  36127823 atactctaacatcatttaatcatcaattaaagcaactacattcaattataaactac 36127768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 36127752 - 36127686
Alignment:
Q  56 aattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||||| |||| |||| |||| ||||||||||| |||||||||||||||||  |||||||    
T  36127752 aattataaactacatgcactcataaaaaattcaattcctatatcaaccctaaccacatcaaaactac 36127686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 42756483 - 42756321
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| |||||||           | |||||||||||||||||||||  |    
T  42756483 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaa--taaacctaaacaaactaacattatta 42756386  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||| | ||||| || | ||| ||||||||||||||| || ||| |||||||||| ||||||||||    
T  42756385 ttaaaatgattgatacaactgacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 42756321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 30255819 - 30255907
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||||||||||||||||| |||  |||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  30255819 aacctaaacaaactaaccttatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 30255907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 31045336 - 31045388
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||||||| ||||||| | ||| |||||||||||||||||||||||    
T  31045336 tgcaatcatcaaaatgtcaattcattcataaaccctaaccacatgcaaactac 31045388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 44229971 - 44229883
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  44229971 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcaattgatttgcttgcaattcgtgaaaat 44229883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 48888988 - 48888904
Alignment:
Q  149 taaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  48888988 taaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 48888904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 49196264 - 49196352
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| || ||| || ||||||| ||||||||||    
T  49196264 aacctaaacaaactaacattatcattaaagtgattgatacaacttacttgtgataatgtgcagttgattttcttgcaattcgtgaaaat 49196352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 3501635 - 3501799
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||   | ||||||||||||||||| |||||||||| |||||||           | |||||||||||| ||||||||| |    
T  3501635 tgcaatcatcaaattctcaattttgaaatcaaccctaaccacatacaaactactctaatttttttttttaaaaatcaacctaaacaaattaacattaaca 3501734  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  3501735 ttaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 3501799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 3976036 - 3975876
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||  || ||||||||||||||||| |||||||||| |||||||          |  |||||||||||| ||||||||| |    
T  3976036 tgcaatcatcaaattgtcaatttttaaatcaaccctaaccacatacaaactactctaatttttttaaaaaaatc--aacctaaacaaattaacattaaca 3975939  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaa 230  Q
    ||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||    
T  3975938 ttaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaa 3975876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 48563273 - 48563110
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | ||||||| |||||||||||||||||||| | ||||           | |||||||||||||||||||||  ||    
T  48563273 tgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatgcaaactactctaatttttttttttaaaataaacctaaacaaactaacattatcat 48563174  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || | ||||| || | |||||||| |||||||||| || ||| |||||||||| | ||||||||    
T  48563173 taaaatgattgatacaacttacttatgataatgtgcagttgatttgcttgcaatttgtgaaaat 48563110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 597015 - 596927
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| |||||||| ||||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  597015 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcaattgatttgcttgcaattcgtgaaaat 596927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 597088 - 597034
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | |||||   || ||||||||||||||||||||||||||||    
T  597088 tgcaatcatcaaattgtcaatatttaaatcaaccctaaccacatgcaaactactc 597034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 4008140 - 4008226
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaa 230  Q
    |||||||||||| |||||||| ||||| | ||||| |  | ||||||||||||||||||| || ||| |||||||| | ||||||||    
T  4008140 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgctattcgtgaaa 4008226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 20917760 - 20917814
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  20917760 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactc 20917814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 20926722 - 20926776
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  20926722 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactc 20926776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 42165419 - 42165333
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaa 230  Q
    |||||||||||| |||||||| ||||| | ||||  |  | ||||||||||||||||||| || ||| |||||||||| ||||||||    
T  42165419 aacctaaacaaattaacattatgattaaaatgatggacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaa 42165333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 44230043 - 44229989
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  44230043 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactc 44229989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 48889073 - 48889011
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aattttt 131  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| |||||||    
T  48889073 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttt 48889011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 50216621 - 50216675
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  50216621 tgcaatcatcaaattatcaattttaaaatcaaccctaaccacatgcaaactactc 50216675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 51807225 - 51807136
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaata 233  Q
    |||||||||||||| ||||||  |||| | ||||| || | ||||||||||||||||||  || ||| |||||||||| | |||||||||    
T  51807225 aacctaaacaaactgacattatcattaaaatgattgatacaacttacttgtgataatgtacagttgatttgcttgcaatttgtgaaaata 51807136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 50216697 - 50216785
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| | ||||||  |||| | ||||| |  | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  50216697 aacctaaacaaatttacattatcattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 50216785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 50963210 - 50963122
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||  |  ||| |||||||||| ||||||||||    
T  50963210 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtacacttgatttgcttgcaattcgtgaaaat 50963122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 21141414 - 21141305
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  21141414 atactctaacatcattcaatcatcaattaaagccactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaccaca 21141315  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  21141314 tgaaaactac 21141305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 97634 - 97743
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  97634 atactctaacatcattcaatcatcaattaaagccactacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaacaca 97733  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  97734 tgaaaactac 97743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 38127169 - 38127278
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||| |||||||||| |||||||||||||||||     
T  38127169 atactctaacatcattcaaacatcaattaaagcaacaacattcaactataaaatacatgcaatcatcaaattttcaattccaacatcaaccctaaccacg 38127268  T
Q  113 tgcaaactac 122  Q
    ||||||||||    
T  38127269 tgcaaactac 38127278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 13639709 - 13639818
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  13639709 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 13639808  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  13639809 tgaaaactac 13639818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 19156402 - 19156293
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  19156402 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 19156303  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  19156302 tgaaaactac 19156293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 50343655 - 50343764
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| ||||||| ||||  | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  50343655 atactctaacatcattcaatcatcaatcaaagtcagtacattcaattataaactacatgcaatcatcaaaaattcaattcctacatcaaccctaaccaca 50343754  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  50343755 tgaaaactac 50343764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 2365618 - 2365514
Alignment:
Q  18 ctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaa 117  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||| ||    
T  2365618 ctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccacatgaaa 2365519  T
Q  118 actac 122  Q
    |||||    
T  2365518 actac 2365514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 26876044 - 26875935
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| ||||  |||||||||||||||||||||||||||    
T  26876044 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaagtcaattcctacatcaaccctaaccaca 26875945  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  26875944 tgaaaactac 26875935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 3732067 - 3732176
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  3732067 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 3732166  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  3732167 tgaaaactac 3732176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 8474172 - 8474063
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||| |||||||||||||    
T  8474172 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcatacattaaccctaaccaca 8474073  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  8474072 tgaaaactac 8474063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 47656257 - 47656196
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaa 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47656257 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacatgcaa 47656196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 470513 - 470443
Alignment:
Q  52 attcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||  |||||||    
T  470513 attcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccacatcaaaactac 470443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 17514526 - 17514614
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgattg-cttgcaaatcgtgaaaat 232  Q
    |||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||| ||  |||||||| |||| |||| ||||||||    
T  17514526 aacctaaacaatttaacattaagaatacaatgattaatgctacttacttgtgataatatgaggatgattgacttgtaaattgtgaaaat 17514614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 35258616 - 35258779
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| |||||||           | |||||||||||||||||||||  |    
T  35258616 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttttttaaaaa---taaacctaaacaaactaacattatta 35258712  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatgat-tgcttgcaaatcgtgaaaatag 234  Q
    ||| | ||||| || | ||||||||||||||||||| || |||| ||||||||| || |||||||||    
T  35258713 ttaaaatgattgatacaacttacttgtgataatgtgcagttgatatgcttgcaattcatgaaaatag 35258779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 52802461 - 52802297
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| | ||||           | |||||||||||| ||||||||  ||    
T  52802461 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttaaaaaaaatcaacctaaacaaattaacattatcat 52802362  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaata 233  Q
    || | ||||| |  | ||||||||||||||||||| || ||| |||||||||| |||||||||||    
T  52802361 taaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaata 52802297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 23275925 - 23276013
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||| ||| || ||| |||||||||| ||||||||||    
T  23275925 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataacgtgcagttgatttgcttgcaattcgtgaaaat 23276013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 51321044 - 51320882
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| ||||||           | |||||||||||||||||||||  ||    
T  51321044 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctatttttttttaaaa---taaacctaaacaaactaacattatcat 51320948  T
Q  170 tacattgatta--atgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || | ||||||  || | ||||||||||||||||||| || ||| |||||| ||| ||||||||||    
T  51320947 taaaatgattattattcaacttacttgtgataatgtgcagttgatttgcttccaattcgtgaaaat 51320882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 30890358 - 30890230
Alignment:
Q  103 cctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatg 202  Q
    |||||||||||||||||||||||||||||          |||||| |||||||| ||||||||| |||| | ||||| |  | |||||||||||||||||    
T  30890358 cctaaccacatgcaaactactcaatttttttaaaaaa--cttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatg 30890261  T
Q  203 tggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || |  ||| |||||||||| ||||||||||    
T  30890260 tgcacttgatttgcttgcaattcgtgaaaat 30890230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 11196210 - 11196156
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||||| ||||||   | ||||||||||||||||||||||||||||    
T  11196210 tgcaatcatcaaaatgtcaattttaaaatcaaccctaaccacatgcaaactactc 11196156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 11183434 - 11183346
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||||||||||||||||||| |  |||| | | ||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  11183434 aacctaaacaaactaacataatcattaaaataattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 11183346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 25147622 - 25147571
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactac 122  Q
    ||||||||||||| || |||||||||||||||| ||||||| |||||||||||    
T  25147622 tgcaatcatcaaagtt-caattcctacatcaacactaaccagatgcaaactac 25147571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 29622241 - 29622329
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  29622241 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 29622329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 47502571 - 47502503
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgatt 213  Q
    |||||||||||||||||||||  |||| | ||||| || | ||||||||||||||||||| || |||||    
T  47502571 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatt 47502503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 23275847 - 23275901
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  23275847 tgcaatcatcaaattgtcaatttaaaaatcaaccctaaccacatgcaaactactc 23275901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 45825206 - 45825152
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc 124  Q
    ||||||||||||| | ||||||   | ||||||||||||||||||||||||||||    
T  45825206 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactc 45825152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 131
Target Start/End: Complemental strand, 19925039 - 19925011
Alignment:
Q  103 cctaaccacatgcaaactactcaattttt 131  Q
    |||||||||||||||||||||||||||||    
T  19925039 cctaaccacatgcaaactactcaattttt 19925011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 22524383 - 22524295
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||  |||| | ||||| |  | |||||||||||||||| || || ||| |||||||||| ||||||||||    
T  22524383 aacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatttgcagttgatttgcttgcaattcgtgaaaat 22524295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 5197360 - 5197251
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||    
T  5197360 atactctaacatcattcaatcatcaattaaagtaactacattcaattataaactacatgcaatcataaaaaattcaattcatacatcaaccctaaccaca 5197261  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  5197260 tgaaaactac 5197251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 19040803 - 19040912
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  19040803 ataccctaacatcattcaatcatcaattaaaccaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 19040902  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  19040903 tgaaaactac 19040912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 30705523 - 30705414
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  30705523 ataccctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcactcataaaaaattcaattcctacatcaaccctaaccaca 30705424  T
Q  113 tgcaaactac 122  Q
    |  |||||||    
T  30705423 taaaaactac 30705414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 27673339 - 27673448
Alignment:
Q  13 atactctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccaca 112  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| |||| ||||||||||| |||||| |||||||||    
T  27673339 ataccctaacatcattcaatcatcaattaaagcaactacattcaattataaactacatgcactcataaaaaattcaattcctatatcaactctaaccaca 27673438  T
Q  113 tgcaaactac 122  Q
    || |||||||    
T  27673439 tgaaaactac 27673448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 8701967 - 8702139
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||| |  || || |||||||||||||||||||||||| ||||          ||||||||||||||| ||||||||||||    
T  8701967 tgcaatcatcaaattgtcaattcatttataaaacctaaccacatgcaaactactcaaatttttttaaaaa--cttaacctaaacaaattaacattaagat 8702064  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaatagaaattggag 243  Q
    | || ||||||||  ||||||||||||||||||||| |||||||  ||||||| |||||||||| ||| ||||||    
T  8702065 tgcaatgattaatagtacttacttgtgataatgtggggatgattaacttgcaattcgtgaaaatggaatttggag 8702139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 40624737 - 40624839
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgatt-gcttgcaaatcgtgaaaatagaaattg 240  Q
    ||||||||||||||||||||||||| ||| || |||| |||| ||||||||||||||||||||| ||||||| |||||||| |||||||||| ||| |||    
T  40624737 cttaacctaaacaaactaacattaacattgcaatgatcaatggtacttacttgtgataatgtggggatgattggcttgcaattcgtgaaaatggaatttg 40624836  T
Q  241 gag 243  Q
    |||    
T  40624837 gag 40624839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 17658582 - 17658491
Alignment:
Q  142 cttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatgattg-cttgcaaatcgtgaaaat 232  Q
    ||||||||||||||| ||||||||| ||| || ||||||||| ||||||| ||||||||||||| |||||||| ||||||| ||||||||||    
T  17658582 cttaacctaaacaaattaacattaacattgcaatgattaatggtacttacctgtgataatgtggggatgattgtcttgcaattcgtgaaaat 17658491  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 20422267 - 20422098
Alignment:
Q  72 caatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagatta 171  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |             || |||||||||  ||||||| |||||    
T  20422267 caatcatcaaattgtcaattcctacatcaaccctaaccacatgcaaactactcaaattctttaaaag------aaactaaacaaatgaacattatgatta 20422174  T
Q  172 c-attgattaatgctacttacttgtgataatgtggagatgattg-cttgcaaatcgtgaaaatagaaattggagga 245  Q
    | | |||||||| ||| |||||||||||||| ||||||| ||||  ||||||||||||||||| || |||| ||||    
T  20422173 caaatgattaatactatttacttgtgataatatggagattattgagttgcaaatcgtgaaaatggagattgaagga 20422098  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 19228415 - 19228577
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||  ||||||           | |||||||||||||||||||||  ||    
T  19228415 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactatatttttttaaaaaaaa-taaacctaaacaaactaacattatcat 19228513  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  19228514 taaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 19228577  T

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Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 42942229 - 42942363
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| | ||||           | |||||||||||||||||||||  ||    
T  42942229 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttttaaaaaataaacctaaacaaactaacattatcat 42942328  T
Q  170 tacattgattaatgctacttacttgtgataatgtg 204  Q
    || | ||||| |||| |||||||||||||||||||    
T  42942329 taaaatgattgatgcaacttacttgtgataatgtg 42942363  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 7757580 - 7757489
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaataga 235  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| || ||| |||||||||| |||||||||||||    
T  7757580 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaataga 7757489  T

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Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 512515 - 512677
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagat 169  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| ||||||           | |||||||||||||||||||||  ||    
T  512515 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctattttttttttaaaaa-taaacctaaacaaactaacattatcat 512613  T
Q  170 tacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || | ||||| || | ||||||||||||||||||  || ||| |||||||||| || |||||||    
T  512614 taaaatgattgatacaacttacttgtgataatgtacagttgatttgcttgcaattcatgaaaat 512677  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 38968351 - 38968263
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||||| |||||||||||||||  |||| | ||||| || | ||||||||||||||||||| || ||| |||||||||| ||||||||||    
T  38968351 aaccttaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaat 38968263  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 14432 - 14594
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| ||||||||   | ||||||||||||||||| |||||||||| |||||||          |  |||||||||||| ||||||||| |    
T  14432 tgcaatcatcaaattttcaattttgaaatcaaccctaaccacatacaaactactctaattttttttaaaaaatc--aacctaaacaaattaacattaaca 14529  T
Q  169 ttacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    ||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  14530 ttaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 14594  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 28241575 - 28241703
Alignment:
Q  103 cctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatg 202  Q
    |||||||||||||||||||||||||||||          |||||| |||||||| ||||||||| |||| | |||||  | | |||||||||||||||||    
T  28241575 cctaaccacatgcaaactactcaattttttttaaaaa--cttaacataaacaaattaacattaacattaaaatgattggtacaacttacttgtgataatg 28241672  T
Q  203 tggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || |  ||| |||||||||| ||||||||||    
T  28241673 tgcacttgatttgcttgcaattcgtgaaaat 28241703  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 8580322 - 8580410
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagat-gattgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| |  | | |||||||||| ||||||||||    
T  8580322 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttggtttgcttgcaattcgtgaaaat 8580410  T

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Target: scaffold0877 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0877
Description:

Target: scaffold0877; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 4344 - 4457
Alignment:
Q  17 tctaacatcattcaaacatcaattaaagcaactacattcaattataaactacctgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgca 116  Q
    ||||||||||||||||||||||||| | |||||||||||  |||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  4344 tctaacatcattcaaacatcaattacaacaactacattcgtttataatctacatgcaatcatcaaaatttcaattcctacatcaacccttaccacatgca 4443  T
Q  117 aactactcaattttt 131  Q
    |||||| ||||||||    
T  4444 aactac-caattttt 4457  T

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Target: scaffold0101 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 40811 - 40939
Alignment:
Q  103 cctaaccacatgcaaactactcaatttttnnnnnnnnnncttaacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatg 202  Q
    |||||||||||||||||||||||||||||          |||||| |||||||| ||||||||| |||| | ||||| |  | |||||||||||||||||    
T  40811 cctaaccacatgcaaactactcaatttttttaaaaaa--cttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatg 40908  T
Q  203 tggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    || |  ||| |||||||||| ||||||||||    
T  40909 tgcacttgatttgcttgcaattcgtgaaaat 40939  T

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Target: scaffold0155 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 8533 - 8401
Alignment:
Q  70 tgcaatcatcaaaatttcaattcctacatcaaccctaaccacatgcaaactactc-aatttttnnnnnnnnnncttaacctaaacaaactaacattaaga 168  Q
    ||||||||||||| | ||||||   | |||||||||||||||||||||||||||| |||||||           | |||||||||||||||||||||  |    
T  8533 tgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaatttttttaaaaat---taaacctaaacaaactaacattatca 8437  T
Q  169 ttacattgattaatgctacttacttgtgataatgtg 204  Q
    ||| | | ||| |||| |||||||||||||||||||    
T  8436 ttaaaataattgatgcaacttacttgtgataatgtg 8401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 7674 - 7586
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||| |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  7674 aacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 7586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 15439 - 15525
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaa 230  Q
    |||||||||||| |||||||| ||||| | ||||| |  | |||||||| |||||||||| || ||| |||||||||| ||||||||    
T  15439 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaattcgtgaaa 15525  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 18112 - 18200
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||  |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  18112 aacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 18200  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 54732 - 54644
Alignment:
Q  145 aacctaaacaaactaacattaagattacattgattaatgctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaat 232  Q
    |||||||||||| ||||||||  |||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| ||||||||||    
T  54732 aacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaat 54644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 246079 - 246043
Alignment:
Q  77 atcaaaatttcaattcctacatcaaccctaaccacat 113  Q
    |||||||||| |||| |||||||||||||||||||||    
T  246079 atcaaaatttaaattgctacatcaaccctaaccacat 246043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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