View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-1 (Length: 838)
Name: NF1023-Insertion-1
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 790; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 8 - 819
Target Start/End: Original strand, 38052696 - 38053509
Alignment:
| Q |
8 |
gaaagctctagtagtactaaacatgatttgaatcgcttggaaaaatgtggtagcactgagaagagaaagggtgagtttgatttagatgctgattttgatt |
107 |
Q |
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| T |
38052696 |
gaaagctctagtagtactaaacatgatttgaatcgcttggaaaaatgtggtagcactgagaagagaaagggtgagtttgatttagatgctgattttgatt |
38052795 |
T |
|
| Q |
108 |
ttgataaggtactatactcatgtcaatatgctgagtgtccacaaagtgatttgtgcatgggattttcagacaaaagttcaagggtgaaccatgaatcact |
207 |
Q |
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| T |
38052796 |
ttgataaggtactatactcatgtcaatatgctgagtgtccacaaagtgatttgtgcatgggattttcagacaaaagttcaagggtgaaccatgaatcaca |
38052895 |
T |
|
| Q |
208 |
ctgttcttacagaacagaacaaggacatgttcccttccatgattttctgtcagatgattggttgaatatggatatagcaggggatgatgttaatgagtcg |
307 |
Q |
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| T |
38052896 |
ctgttcttacagaacagaacaaggacatgttcccttccatgattttctgtcagatgattggttgaatatggatatagcaggggatgatgttaatgagtcg |
38052995 |
T |
|
| Q |
308 |
ggagagattgtggatatgacattagaagattatggtaacttttggctaaacagcatgcaagatcttgaattgcacatgggagtggacttggaaagagata |
407 |
Q |
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| T |
38052996 |
ggagagattgtggatatgacattagaagattatggtaacttttggctaaacagcatgcaagatcttgaattgcacatgggagtggacttggaaagagata |
38053095 |
T |
|
| Q |
408 |
acatggacttgaatcaaaatccagcgcaagagaccacattaagtgatgaagcaacctcagtttgggacttgccatatgattaagttcttttgcttacctc |
507 |
Q |
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| T |
38053096 |
acatggacttgaatcaaaatccagcgcaagagaccacattaagtgatgaagcaacctcagtttgggacttgccatacgattaagttcttttgcttacctc |
38053195 |
T |
|
| Q |
508 |
actgatgaactcggatctttacggccatccagtccactaagatttggctggacggctacagataatctgagctctgaagtgcataccaatttgttttctt |
607 |
Q |
| |
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| T |
38053196 |
actgatgaactcggatctttacggccatccagtccactaagatttggctggacggctacagataatctgagctctgaagtgcataccaatttgttttctt |
38053295 |
T |
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| Q |
608 |
tccaccatttaattagatagaaaataaaggtctaaataagtaggggaccgtctcctgatatgtatgtaactcgcttgaggtttagcatgttcgtattatc |
707 |
Q |
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| T |
38053296 |
tccaccatttaattagatagaaaataaaggtctaaataagtaggggaccgtctcctgatatgtatgtaactcgcttgaggtttagcatgttcgtattatc |
38053395 |
T |
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| Q |
708 |
tcggatcctctgcggtcatctagtccagtaagatacggttggactgccgcaaatgatccaagctcaagg-tgcatgtcgattttcttactttccacta-t |
805 |
Q |
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| T |
38053396 |
tcggatcctctgcggtcatctagtccagtaagatacggttggactgccgcaaatgatccaagctcaaggctgcatgtcgattttcttactttccactatt |
38053495 |
T |
|
| Q |
806 |
taaatagatagaaa |
819 |
Q |
| |
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| T |
38053496 |
taaatagatagaaa |
38053509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 41240262 - 41240392
Alignment:
| Q |
168 |
gattttcagacaaaagttcaagggtgaaccatgaatcactctgttcttacagaacagaacaaggac------atgttcccttccatgat--tttctgtca |
259 |
Q |
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|||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| | | ||||||||||||||| | ||| ||| |
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| T |
41240262 |
gattttcaaacaaaagctcaagggtgaaccataaatcactctcttcttacagaacagaacaaggtcttgttaaagttcccttccatgattatctctctca |
41240361 |
T |
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| Q |
260 |
gatgattggttgaatatggatatagcagggg |
290 |
Q |
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| T |
41240362 |
gatgattggttgaatatggatatagcagggg |
41240392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 411 - 497
Target Start/End: Original strand, 41240531 - 41240617
Alignment:
| Q |
411 |
tggacttgaatcaaaatccagcgcaagagaccacattaagtgatgaagcaacctcagtttgggacttgccatatgattaagttcttt |
497 |
Q |
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| T |
41240531 |
tggacttgaatcaaaatccagcgaaagagaccaggccaagtcatgaagcaacctcagtttgggacttgacctataattaagttcttt |
41240617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 41240435 - 41240538
Alignment:
| Q |
294 |
atgttaatgagtcgggagagattgtggatatgacattagaagattatggtaacttttggctaaacagcatgcaagatcttgaattgcacatgggagtgga |
393 |
Q |
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|||| ||||||| | |||| ||||||| || |||| ||||||||| |||| |||| ||||||| ||||| |||||||||||||||| |||||||||| |
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| T |
41240435 |
atgtgaatgagttgagagaaattgtggttaggacagtagaagattttggtggctttcggctaaatggcatgggagatcttgaattgcacctgggagtgga |
41240534 |
T |
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| Q |
394 |
cttg |
397 |
Q |
| |
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|||| |
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| T |
41240535 |
cttg |
41240538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 41240173 - 41240217
Alignment:
| Q |
101 |
tttgattttgataaggtactatactcatgtcaatatgctgagtgtcca |
148 |
Q |
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| T |
41240173 |
tttgattttgataag---ctatactcatgtcaatatgctgagtgtcca |
41240217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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