View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1023-Insertion-12 (Length: 614)
Name: NF1023-Insertion-12
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-12 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 281 - 614
Target Start/End: Original strand, 38090365 - 38090711
Alignment:
| Q |
281 |
tgcatttctagtatcattcactaagcagaggatattgcatgtttaagtaattaagaaacaaatttgtacaatggcgtgacattttaaattttggttagtt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090365 |
tgcatttctagtatcattcactaagcagaggatattgcatgtttaagtaattaagaaacaaatttgtacaatggcgtgacattttaaattttggttagtt |
38090464 |
T |
|
| Q |
381 |
atgttatgaatgagatgagatggtaactttgtatctatcatatgtatacttcttaactactagctagtaattcataatattcatgtaacgaattttctta |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090465 |
atgttatgaatgagatgagatggtaactttgtatctatcatatgtatacttcttaactactagctagtaattcataatattcatgtaacgaattttctta |
38090564 |
T |
|
| Q |
481 |
cagcgttaggtccagggtaaacattaac---attaaatataaaattagtgtaaggaaaatggtactattatatgagagcta----------gcaagtggc |
567 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38090565 |
caacgttaggtccagggtaaacattaacattattaaatataaaattagggtaaggaaaatggtactattatatgagagctagcaagagcttgcaagtggc |
38090664 |
T |
|
| Q |
568 |
aattgctaaagactagatgtgtcaatttcattctactctacagagaa |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090665 |
aattgctaaagactagatgtgtcaatttcattctactctacagagaa |
38090711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 38090055 - 38090332
Alignment:
| Q |
8 |
tcagtaaccaaccaatttccaaggttcactgctttgagtggcaaattannnnnnnnggtttcagcagcataaacattgtgaaataatgagaggttgaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38090055 |
tcagtaaccaaccaatttccaaggttcactgctttgagtggcaaattattttttttggtttcagcagcataaacattgtgaaataatgagaggttgaaaa |
38090154 |
T |
|
| Q |
108 |
tgaacaaaatgttcacataaaagaatttgttgcacatcttattacactcacaatgtgtgaagtgagtgagtactacacattatgaggatatatat----- |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38090155 |
tgaacaaaaggttcacataaaagaatttgttgcacatcttattacactcacaatgtgtgaagtgagtgagtactacacatgatgaggatatatatagttt |
38090254 |
T |
|
| Q |
203 |
-agtttatataatcgaatttcacatttcacactataaataaataatcacctgaaaaaattcacacttagaaatatcaagtgc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38090255 |
aagtttatataatcgaatttcacatttcacact----ataaataatcacccgaaaaaattcacacttagaaatatcaagtgc |
38090332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University