View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-13 (Length: 306)
Name: NF1023-Insertion-13
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 29784820 - 29784517
Alignment:
| Q |
8 |
gtatggggtttgattttcaggtagatgatgaagatgatgaaaaagcagtgataggattttggagtgcatttagttggttggtgggtatgacattggtcat |
107 |
Q |
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| T |
29784820 |
gtatggggtttgattttcaggtagatgatgaagatgatgaaaaagcagtgataggattttggagtgcatttagttggttggtgggtatgacattggtcat |
29784721 |
T |
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| Q |
108 |
atctgtgctttctgagtatgttgtgggaaccattgaggtaaaaagt---actaatatgtttattttggttatagtgagctgaattttcaatgaaatttaa |
204 |
Q |
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| T |
29784720 |
atctgtgctttctgagtatgttgtgggaaccattgaggtaaaaagtactactaatatgtttattttggttataatgagctgaattttcaatgacatttaa |
29784621 |
T |
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| Q |
205 |
attgaatacaaaattagattaatgggttaagtatctaacaattttatgtata---aataactaggctgcttcagattcttggggtatttctgttagcttc |
301 |
Q |
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| T |
29784620 |
attgaatgcaaaattagattaat-ggttaagtatctaacccttttgtgcataatcaataactaggctgcttcagattcttggggtatttctgttagcttc |
29784522 |
T |
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| Q |
302 |
attag |
306 |
Q |
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| T |
29784521 |
attag |
29784517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 21906389 - 21906208
Alignment:
| Q |
34 |
gatgaagatgatgaaaaagcagtgataggattttggagtgcatttagttggttggtgggtatgacattggtcatatctgtgctttctgagtatgttgtgg |
133 |
Q |
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| T |
21906389 |
gatgaagatgatgaaaaagaagtgataggattttggagtgcatttagttggttggtgggtatgacattggtgatatctgtgctttctgagtatgttgtgg |
21906290 |
T |
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| Q |
134 |
gaaccattgaggtaaaaagtac------taatatgtttattttggttatagtgagctgaattttcaatgaaatttaaattga |
209 |
Q |
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| T |
21906289 |
gaaccattgaggtaaagagtacactaataaatatgtttattttggttatagtgagctgaattttcaatgacatttaaattga |
21906208 |
T |
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