View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1023-Insertion-14 (Length: 543)

Name: NF1023-Insertion-14
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1023-Insertion-14
NF1023-Insertion-14
[»] chr4 (3 HSPs)
chr4 (299-543)||(17800993-17801243)
chr4 (8-185)||(17800609-17800788)
chr4 (281-323)||(51396155-51396197)
[»] chr2 (8 HSPs)
chr2 (278-318)||(19493277-19493317)
chr2 (146-183)||(41305875-41305912)
chr2 (151-185)||(85693-85727)
chr2 (280-318)||(3364328-3364366)
chr2 (281-318)||(18555826-18555863)
chr2 (152-185)||(37200347-37200380)
chr2 (151-184)||(39094198-39094231)
chr2 (150-185)||(30371383-30371419)
[»] chr7 (6 HSPs)
chr7 (150-185)||(16902360-16902395)
chr7 (280-329)||(21298004-21298053)
chr7 (150-185)||(24845636-24845672)
chr7 (147-184)||(44413878-44413917)
chr7 (153-185)||(44414101-44414133)
chr7 (153-185)||(48104510-48104542)
[»] chr8 (6 HSPs)
chr8 (151-185)||(4105303-4105337)
chr8 (151-185)||(40652677-40652711)
chr8 (151-185)||(43945408-43945442)
chr8 (274-315)||(34019136-34019177)
chr8 (154-182)||(34985128-34985156)
chr8 (153-185)||(38500537-38500569)
[»] chr6 (4 HSPs)
chr6 (151-185)||(17441401-17441435)
chr6 (280-318)||(30381567-30381605)
chr6 (148-185)||(5953158-5953195)
chr6 (274-318)||(24387773-24387817)
[»] chr5 (5 HSPs)
chr5 (264-318)||(22551523-22551577)
chr5 (149-185)||(20698543-20698580)
chr5 (148-185)||(21149124-21149161)
chr5 (149-185)||(26035107-26035143)
chr5 (264-332)||(35936525-35936593)
[»] scaffold0809 (1 HSPs)
scaffold0809 (148-185)||(3765-3802)
[»] chr1 (4 HSPs)
chr1 (281-318)||(2059198-2059235)
chr1 (280-321)||(2472602-2472643)
chr1 (147-185)||(36343149-36343189)
chr1 (149-185)||(50595997-50596033)
[»] scaffold0450 (1 HSPs)
scaffold0450 (146-185)||(8118-8158)
[»] chr3 (2 HSPs)
chr3 (146-182)||(31173611-31173647)
chr3 (149-185)||(43767915-43767951)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 9e-96; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 299 - 543
Target Start/End: Original strand, 17800993 - 17801243
Alignment:
Q  299 gggataaagatctattaaccattgaattaattaatcaatgtaagtaatagcataggagagaaaaaccttgtcatgaaaatagatgctt-------gagtc 391  Q
    ||||||||||  |||||||| || |||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||       |||||    
T  17800993 gggataaagacatattaacctttaaattaattaatcaaggtaagtaatagcatagcaaagaaaaaccttgtcatgaaaatagatgcttaatttatgagtc 17801092  T
Q  392 ggcccattattttttagtagtaacaaatttgaatttgttttatatatattcatataggttcccaatttgggaattgttttttcttcatcaatttatttgg 491  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  17801093 ggtccatcattttttagtagtaacaaatttgaatttgttttatatatattcatataggttcccgatttgggaatt-ttttttcttcatcaatttatttgg 17801191  T
Q  492 cctggcccctccaagattgtgacgttacgtaacgaaattgacccatccttaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17801192 cctggcccctccaagattgtgacgttacgtaacgaaattgacccatccttaa 17801243  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 17800609 - 17800788
Alignment:
Q  8 gaataaacaaagtggcaactactaactaggnnnnnnntgaatgaca--acaatcacacattcatatattaactagctagcataaaattcttcnnnnnnnn 105  Q
    ||||||||||||||||||||||||||||||       |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||            
T  17800609 gaataaacaaagtggcaactactaactaggcccccc-tgaatgacacaacaatcacacattcacatattaactagctagcataaaattcttcaaaaaaaa 17800707  T
Q  106 nnnnnnnn-tactagctagcatagcatagcacatgtccgttaaattagggttaataggtctttactcctgtaatataggtc 185  Q
             |||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  17800708 agtaaaaaatactagctagcatagcatagcacaggttagttaaattagggttaataggtctttactcctgtaatataggtc 17800788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 51396197 - 51396155
Alignment:
Q  281 aaataacttatattacaggggataaagatctattaaccattga 323  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||    
T  51396197 aaatgacttatattacaggggataaagacctattaacccttga 51396155  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 19493317 - 19493277
Alignment:
Q  278 aaaaaataacttatattacaggggataaagatctattaacc 318  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  19493317 aaaaaataacttatattacaggggataaagacctattaacc 19493277  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 41305875 - 41305912
Alignment:
Q  146 aaattagggttaataggtctttactcctgtaatatagg 183  Q
    |||||||||||||||||||||||| |||||||||||||    
T  41305875 aaattagggttaataggtctttacccctgtaatatagg 41305912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 85727 - 85693
Alignment:
Q  151 agggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||||| |||||||||||||||    
T  85727 agggttaataggtctttacccctgtaatataggtc 85693  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 3364366 - 3364328
Alignment:
Q  280 aaaataacttatattacaggggataaagatctattaacc 318  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  3364366 aaaatgacttatattacaggggataaagacctattaacc 3364328  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 18555826 - 18555863
Alignment:
Q  281 aaataacttatattacaggggataaagatctattaacc 318  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  18555826 aaataacatatattacaggggataaagacctattaacc 18555863  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 37200347 - 37200380
Alignment:
Q  152 gggttaataggtctttactcctgtaatataggtc 185  Q
    |||||||||||||||||| |||||||||||||||    
T  37200347 gggttaataggtctttacccctgtaatataggtc 37200380  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 39094198 - 39094231
Alignment:
Q  151 agggttaataggtctttactcctgtaatataggt 184  Q
    ||||||||||||||||||| ||||||||||||||    
T  39094198 agggttaataggtctttacccctgtaatataggt 39094231  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 30371383 - 30371419
Alignment:
Q  150 tagggttaataggtctttact-cctgtaatataggtc 185  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30371383 tagggttaataggtctttactccctgtaatataggtc 30371419  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 16902395 - 16902360
Alignment:
Q  150 tagggttaataggtctttactcctgtaatataggtc 185  Q
    |||||||||||||||||||| |||||||||||||||    
T  16902395 tagggttaataggtctttacccctgtaatataggtc 16902360  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 21298053 - 21298004
Alignment:
Q  280 aaaataacttatattacaggggataaagatctattaaccattgaattaat 329  Q
    ||||| |||||||||||||||| |||||| ||||||||| || |||||||    
T  21298053 aaaatgacttatattacagggggtaaagacctattaaccttttaattaat 21298004  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 185
Target Start/End: Original strand, 24845636 - 24845672
Alignment:
Q  150 tagggttaataggtcttta-ctcctgtaatataggtc 185  Q
    ||||||||||||||||||| |||||||||||||||||    
T  24845636 tagggttaataggtctttacctcctgtaatataggtc 24845672  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 44413878 - 44413917
Alignment:
Q  147 aattagggttaataggtcttta--ctcctgtaatataggt 184  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  44413878 aattagggttaataggtctttaccctcctgtaatataggt 44413917  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 44414133 - 44414101
Alignment:
Q  153 ggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||| |||||||||||||||    
T  44414133 ggttaataggtctttacccctgtaatataggtc 44414101  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 48104510 - 48104542
Alignment:
Q  153 ggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||| |||||||||||||||    
T  48104510 ggttaataggtctttacccctgtaatataggtc 48104542  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 4105337 - 4105303
Alignment:
Q  151 agggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||||| |||||||||||||||    
T  4105337 agggttaataggtctttacccctgtaatataggtc 4105303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 40652711 - 40652677
Alignment:
Q  151 agggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||||| |||||||||||||||    
T  40652711 agggttaataggtctttacccctgtaatataggtc 40652677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 43945442 - 43945408
Alignment:
Q  151 agggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||||| |||||||||||||||    
T  43945442 agggttaataggtctttacccctgtaatataggtc 43945408  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 34019136 - 34019177
Alignment:
Q  274 aaataaaaaataacttatattacaggggataaagatctatta 315  Q
    ||||||||||| || |||||||||||||||||||| ||||||    
T  34019136 aaataaaaaatgacctatattacaggggataaagacctatta 34019177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 34985128 - 34985156
Alignment:
Q  154 gttaataggtctttactcctgtaatatag 182  Q
    |||||||||||||||||||||||||||||    
T  34985128 gttaataggtctttactcctgtaatatag 34985156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 38500569 - 38500537
Alignment:
Q  153 ggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||| |||||||||||||||    
T  38500569 ggttaataggtctttacccctgtaatataggtc 38500537  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 17441401 - 17441435
Alignment:
Q  151 agggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||||| |||||||||||||||    
T  17441401 agggttaataggtctttacccctgtaatataggtc 17441435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 30381605 - 30381567
Alignment:
Q  280 aaaataacttatattacaggggataaagatctattaacc 318  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  30381605 aaaataacctatattacaggggataaagacctattaacc 30381567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 5953158 - 5953195
Alignment:
Q  148 attagggttaataggtctttactcctgtaatataggtc 185  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  5953158 attatggttaataggtctttacccctgtaatataggtc 5953195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 24387773 - 24387817
Alignment:
Q  274 aaataaaaaataacttatattacaggggataaagatctattaacc 318  Q
    |||| ||||||||| ||||||||||||| |||||| |||||||||    
T  24387773 aaattaaaaataacctatattacagggggtaaagacctattaacc 24387817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 22551577 - 22551523
Alignment:
Q  264 acaggagggtaaataaaaaataacttatattacaggggataaagatctattaacc 318  Q
    ||||||||  ||||||||||| || ||||||||||||| |||||| |||||||||    
T  22551577 acaggaggaaaaataaaaaatgacctatattacagggggtaaagacctattaacc 22551523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 20698580 - 20698543
Alignment:
Q  149 ttagggttaataggtctttac-tcctgtaatataggtc 185  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  20698580 ttagggttaataggtctttacttcctgtaatataggtc 20698543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 21149161 - 21149124
Alignment:
Q  148 attagggttaataggtctttactcctgtaatataggtc 185  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  21149161 attatggttaataggtctttacccctgtaatataggtc 21149124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 26035143 - 26035107
Alignment:
Q  149 ttagggttaataggtctttactcctgtaatataggtc 185  Q
    |||||||||| |||||||||| |||||||||||||||    
T  26035143 ttagggttaagaggtctttacccctgtaatataggtc 26035107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 35936593 - 35936525
Alignment:
Q  264 acaggagggtaaataaaaaataacttatattacaggggataaagatctattaaccattgaattaattaa 332  Q
    ||||||| | ||| |||||||||| ||||||||||||| |||||  | ||||||| || ||||||||||    
T  35936593 acaggagagaaaacaaaaaataacatatattacagggggtaaagcaccattaacccttaaattaattaa 35936525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 3765 - 3802
Alignment:
Q  148 attagggttaataggtctttactcctgtaatataggtc 185  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  3765 attaaggttaataggtctttacccctgtaatataggtc 3802  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 2059235 - 2059198
Alignment:
Q  281 aaataacttatattacaggggataaagatctattaacc 318  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  2059235 aaataacttatattacagggggtaaagttctattaacc 2059198  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 2472602 - 2472643
Alignment:
Q  280 aaaataacttatattacaggggataaagatctattaaccatt 321  Q
    |||||||| ||||||||||||| |||||| ||||||||||||    
T  2472602 aaaataacctatattacagggggtaaagacctattaaccatt 2472643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 36343149 - 36343189
Alignment:
Q  147 aattagggttaataggtcttta--ctcctgtaatataggtc 185  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  36343149 aattagggttaataggtctttaccctcctgtaatataggtc 36343189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 50595997 - 50596033
Alignment:
Q  149 ttagggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||||||| | |||||||||||||    
T  50595997 ttagggttaataggtctttacccttgtaatataggtc 50596033  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 8158 - 8118
Alignment:
Q  146 aaattagggttaataggtctttactc-ctgtaatataggtc 185  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  8158 aaattagggttaataggtctttacccactgtaatataggtc 8118  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 31173647 - 31173611
Alignment:
Q  146 aaattagggttaataggtctttactcctgtaatatag 182  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  31173647 aaattaggattaataggtctttacccctgtaatatag 31173611  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 43767951 - 43767915
Alignment:
Q  149 ttagggttaataggtctttactcctgtaatataggtc 185  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  43767951 ttagggttaataggtctttacccctgtagtataggtc 43767915  T

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