View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-18 (Length: 132)
Name: NF1023-Insertion-18
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-18 |
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Alignment Details
Target: chr6 (Bit Score: 79; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 3238917 - 3238835
Alignment:
| Q |
46 |
aggaaaggttcctcttaaatcacatgcattgaactcatcccttttattgaattcataattgtgtacaatatttaattattcat |
128 |
Q |
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| T |
3238917 |
aggaaaggttcctcttaaatcacatgcattgaactaatcccttttattgaattcataattgtgtacaatatttaattattcat |
3238835 |
T |
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Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 3238990 - 3238935
Alignment:
| Q |
6 |
caaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238990 |
caaataccaatcttcaatcattcatattatagactaatataggaaaggttcctctt |
3238935 |
T |
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