View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-2 (Length: 860)
Name: NF1023-Insertion-2
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 738; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 6 - 853
Target Start/End: Original strand, 33785817 - 33786664
Alignment:
| Q |
6 |
caaaatttgcgcaaaatcggtgtttttgctctgcttggatatgaaaaatcaacattctttaactctatttttccacttagctttgccaacttgattccat |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33785817 |
caaaatttgcgcaaaatcggtgtttttgctctgcttggatatgaaaaatcaacattctttaactctatttttccacttagcttttccaacttgattccat |
33785916 |
T |
|
| Q |
106 |
tagtttcttctccagcctaatcaaacaaacaacaaatttattaattggttacttcaacatcaaggcattaacaagctattagttgatnnnnnnn-cgtga |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33785917 |
tagtttcttctccagcctaatcaaacaaacaacaaatttattaattggttacttcaacatcaaggcattaacaagctattagttgataaaaaaaacgtga |
33786016 |
T |
|
| Q |
205 |
tttggtgattgattttctaaatctgtatcgtgatttaaatgattttttgtccgatttaaagactgatttgcaaaaaatggataaaactatggtcgataat |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33786017 |
tttggtgattgattttctaaatcggtatcgtgatttaaatgattttttgtccgatttaaagactgatttgcaaaaaatggataaaactatggtcgataat |
33786116 |
T |
|
| Q |
305 |
gtttaacatttgtcatttttcggcctatgatacacaaaaactatagtaatggtcgataagttttatactatcaacaaagtcacacatataattgattgtg |
404 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33786117 |
gtttaacatttgtcatttttcggc-tctgatacacaaaaactatagtaatggttgataagttttatactatcaacaaagtcaca--tataattgattgtg |
33786213 |
T |
|
| Q |
405 |
atttgttgatagtataaaactttttataccgatggtttatcaaaattaaacgaactagatacataccttaggaataagtgattgtctatcaagaatttca |
504 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33786214 |
atttgttgatagtataaaactttttataccgacggtttatcaaaattaaacgaactagatacataccttaggaataagagattgtctatcaagaatttca |
33786313 |
T |
|
| Q |
505 |
aaaactgatgcaactgctgttgagcttttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactcaccaaaacnnnnnnngttt |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
33786314 |
aaaactgatgcaactgctgttgagcttttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactcaccaaaacaaaaaaagttt |
33786413 |
T |
|
| Q |
605 |
tgaacacatcacctgaagaaatttctctcttttcgaccaatttacctccataccaaaaatccaaagcccaacacataaaagttaaacactgagcagatcc |
704 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33786414 |
tgaacacatcacctgaagaaatttctctcttttcgaccaatttacctccataccaaaaatccaaagcccaacacataaaagttaaacactgagcagatcc |
33786513 |
T |
|
| Q |
705 |
cataccaatgccagctagccaagctttcttcctagcttccatcctcggcgcctcttgcgcctcgtcaaacagtctc-aaacttttgtgatgcttccaaaa |
803 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
33786514 |
cataccaatgccagctagccaagctttcttcctagcttccatcctcggcgcctcttgcgcctcgtcgaacagtctcaaaacttttgtgatgcttccaaaa |
33786613 |
T |
|
| Q |
804 |
gaagttacaattctgtgattataaaccgcctcgacagc-atctgtgtgctt |
853 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
33786614 |
gaagttacaattctgtgattataaaccgcctcgacagcaatctgtgtgctt |
33786664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 531 - 592
Target Start/End: Complemental strand, 2623381 - 2623320
Alignment:
| Q |
531 |
tttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactcaccaaaa |
592 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||| |
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|
| T |
2623381 |
tttagcaagatcattcgtcatgctaccagcatcagcgataacttttccggtacttaccaaaa |
2623320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 592
Target Start/End: Complemental strand, 2591837 - 2591776
Alignment:
| Q |
531 |
tttagcaagatcagaagtcatgctaccagcttcagctataacttttccggtactcaccaaaa |
592 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| || |||||||||||| | ||||||| |
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|
| T |
2591837 |
tttagcaagatcattcgtcatgctaccagcatcagcaattacttttccggtagttaccaaaa |
2591776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 380 - 455
Target Start/End: Complemental strand, 46937032 - 46936957
Alignment:
| Q |
380 |
aaagtcacacatataattgattgtgatttgttgatagtataaaactttttataccgatggtttatcaaaattaaac |
455 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| | ||||||||||||| ||| | || ||||||||||||| |
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|
| T |
46937032 |
aaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaaac |
46936957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 44556777 - 44556727
Alignment:
| Q |
380 |
aaagtcacacatataattgattgtgatttgttgatagtataaaacttttta |
430 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||| |||||||||||| |
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|
| T |
44556777 |
aaagtcgcacatataattgattgtgattttttggcagtttaaaacttttta |
44556727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 45128729 - 45128779
Alignment:
| Q |
380 |
aaagtcacacatataattgattgtgatttgttgatagtataaaacttttta |
430 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||| |||||||||||| |
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|
| T |
45128729 |
aaagtcacacatatgattgattgtaatgcgttgatagtgtaaaacttttta |
45128779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 425
Target Start/End: Complemental strand, 21008178 - 21008134
Alignment:
| Q |
380 |
aaagtcacacatataattgattgtgatttgttgatagtataaaact |
425 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| ||||||||||||| |
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| T |
21008178 |
aaagtcaca-atataaatgattgtgatttgttcatagtataaaact |
21008134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 40363143 - 40363196
Alignment:
| Q |
380 |
aaagtcacacatataattgattgtgatttgttgatagtat-aaaactttttata |
432 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||| ||| ||||||||||||| |
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|
| T |
40363143 |
aaagtcacatatataattgattctaatttgttgataatataaaaactttttata |
40363196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 413
Target Start/End: Original strand, 43244870 - 43244903
Alignment:
| Q |
380 |
aaagtcacacatataattgattgtgatttgttga |
413 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |
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| T |
43244870 |
aaagtcacacatattattgattgtgatttgttga |
43244903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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