View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-3 (Length: 609)
Name: NF1023-Insertion-3
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 8 - 609
Target Start/End: Complemental strand, 20363352 - 20362753
Alignment:
| Q |
8 |
tccaattcttcccttaaagcacaccgcttttgccgattcttttttatattcaaatgcatccatgtatgaacttcgaatatacgatgaaaactcacatgcc |
107 |
Q |
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| T |
20363352 |
tccaattcttcccttaaagcacaccgcttttgccgattcttttctatattcaaatgcatccatgtatgaacttcgaatatacgatgaaaactcacatgcc |
20363253 |
T |
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| Q |
108 |
tcattcactctttgccttaagtgataagtaaccttttgatctttctatgtaacaggggaatgatgtgggaacacaatacaggtctggaatatactattac |
207 |
Q |
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| T |
20363252 |
tcattcactctttgctttaagtgataagtaaccttttgatctttctatgcaacaggggaatgatgtgggaacacaatacaggtctggaatatactattac |
20363153 |
T |
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| Q |
208 |
acccctgaacaagagaaagcagcgcgagaatcgttggaacaacaacaaaagaagttaaacaggaagattgttactgagatccttcctgccaagaagttct |
307 |
Q |
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| T |
20363152 |
acccctgaacaagagaaagcagcgcgagaatcattggaacaacaacaaaagaagttaaacaggaagattgttactgagatccttcctgccaagaagttct |
20363053 |
T |
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| Q |
308 |
acagggcagaagagtatcatcaacaataccttgagaaaggtggccgatttggttgcaaacaatcttcttccaagggatgcagtgatcctattcgatgcta |
407 |
Q |
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| T |
20363052 |
acagggcagaagagtatcatcaacaataccttgaaaaaggtggccgatttggttgcaaacaatcttcttccaagggatgcaatgatcctattcgatgcta |
20362953 |
T |
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| Q |
408 |
tggttaattaatatgctaatcaccaccaagaactagatgactagtttagatgctggaaattgatatgattttgttgataagtatttgttaatactgttaa |
507 |
Q |
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| T |
20362952 |
tggttaattaatatgctaatcaccaccaagaactagatgactagtttagatgctggaaattgatat-attttgttgataagtatttgttaatacttttaa |
20362854 |
T |
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| Q |
508 |
taaaacaaagtttcacactatatgctctattctatttttaggttgaagatcgccataaaatcagttcttttgagtaaacaatattatttctacttttgca |
607 |
Q |
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| T |
20362853 |
taaaacaaagtttcacactatatgctctattctatttttaggttgaagatcgccgtaaaatcagttcttttgagt-cacaatattatttctacttttgca |
20362755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 145 - 416
Target Start/End: Complemental strand, 40486156 - 40485885
Alignment:
| Q |
145 |
gatctttctatgtaacaggggaatgatgtgggaacacaatacaggtctggaatatactattacacccctgaacaagagaaagcagcgcgagaatcgttgg |
244 |
Q |
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| T |
40486156 |
gatctttgtatgtaacaggggaatgatgtgggaacacagtacagatctggaatatacttttacactcctgaacaagagaaaatagctaaagagtctttgg |
40486057 |
T |
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| Q |
245 |
aacaacaacaaaagaagttaaacaggaagattgttactgagatccttcctgccaagaagttctacagggcagaagagtatcatcaacaataccttgagaa |
344 |
Q |
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| T |
40486056 |
aacaacaagagaagcaattgggcaggaagattgctactgagattcttcctgccaagaagttctacagggctgaggagtaccatcaacagtaccttgagaa |
40485957 |
T |
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| Q |
345 |
aggtggccgatttggttgcaaacaatcttcttccaagggatgcagtgatcctattcgatgctatggttaatt |
416 |
Q |
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| T |
40485956 |
agggggtcgattcggtttcaagcaatctgctgctaaaggatgcaatgacccaattcggtgctatggttaatt |
40485885 |
T |
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