View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-4 (Length: 693)
Name: NF1023-Insertion-4
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 7 - 693
Target Start/End: Complemental strand, 54636728 - 54636040
Alignment:
| Q |
7 |
attcagatcagttccagatgcatctcactcacaggaacaagtaacttgacaaacagtggttttattaaaatcttgtnnnnnnngatatttattgaatttt |
106 |
Q |
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| T |
54636728 |
attcagatcagttccagatgcatctcactcacaggaacaagtaacttgacaaacagtggttttattaaaatcttgtaaaaaaagatatttattgaatttt |
54636629 |
T |
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| Q |
107 |
aactggaatggaatcgtcctgaactcgagcatatggtatgtttgtcaaatctgctaaatgcnnnnnnnnnnnnn-atcaagcaacaa-tgcaataaacgg |
204 |
Q |
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| T |
54636628 |
aactggaatggactcgtcctgaactcgagcatatggtatgtttgtcaaatctgctaaatgcttttttttctttctatcaagcaacaaatgcaataaacgg |
54636529 |
T |
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| Q |
205 |
caggagagggcctgcgcccagccaacaaagttaatacatcaaatccagccaataaggcaaaacagcacaaacaaaaattacattaaaagcctatgaacat |
304 |
Q |
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| T |
54636528 |
caggagagggcctgcgcccagccaacaaagttaatacatcaaatccagccaataaggcaaaacagcacaaacaaaaattacattaaaagcctatgaacat |
54636429 |
T |
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| Q |
305 |
agattatatgaacttatcttgccttcttcatttaagtattttcccactgtttttcatttctcatttctggtatattgatgcctaatatgcttcgatcaag |
404 |
Q |
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| T |
54636428 |
agattatatgaacttatcttgccttcttcatttaaatattttcccactctttttcatttctcatttctggtatattgatgccgaatatgcttcgatcaag |
54636329 |
T |
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| Q |
405 |
tctaagtaatcttaatgacgtttcggtttttacatgctcttcatgagtataggtgcatgcatatatgcccaacatttataatccaaggcgcaagctacca |
504 |
Q |
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| T |
54636328 |
tctaagtaatcttaatgacgtttcggtttttacatgctcttcatgagtataggtgcatgcatatatgcccaacatttataatccaaggcacaagctacca |
54636229 |
T |
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| Q |
505 |
aaatgtaattagttattctggctctacttaataagcaggaaaacaagtttgagctgcaaatgaatggcctatgaactatttgaagtttaaactatgagaa |
604 |
Q |
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| T |
54636228 |
aaatgtaattagttattctggctctacttaataagcaggaaaacaagtttgagctgcaaatgaatggcctatgaactatttgaagtttaaactatgagaa |
54636129 |
T |
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| Q |
605 |
aatgtgcagcatatttcgttaagtactcgaaatggctgaaaataaaccagcactattgcaggaaggtaaaataagagattttcccccct |
693 |
Q |
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| T |
54636128 |
aatgtgcagcatatttcattaagtactcgaaatggctgaaaataaaccagcactattgcaggaaggtaaaataagagattttcccccct |
54636040 |
T |
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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 1963746 - 1963694
Alignment:
| Q |
181 |
atcaagcaacaa-tgcaataaacggcaggagagggcctgcgcccagccaacaa |
232 |
Q |
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| T |
1963746 |
atcaagcaacaaatgcaataaacggcaggagagggcctgcgcccagccaacaa |
1963694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 25460093 - 25460126
Alignment:
| Q |
199 |
aaacggcaggagagggcctgcgcccagccaacaa |
232 |
Q |
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| T |
25460093 |
aaacggcaggagagggcctgcgcccagccaacaa |
25460126 |
T |
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