View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-5 (Length: 438)
Name: NF1023-Insertion-5
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-5 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 27426167 - 27426595
Alignment:
| Q |
8 |
tttttggtttatcgcacttaatgaacttataaacttatgaaatacgactatatgagtaatgttgtttgctaaaaggaaaaaatactttgtattctgaaac |
107 |
Q |
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| T |
27426167 |
tttttggtttatcgcacttaatgaacttataaacttatgaaatacgactatatgagtaatgttgtttactaaaagacaaaaatactttgtattctgaaac |
27426266 |
T |
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| Q |
108 |
atttcaaagcaggaccagaacacatgattcctagcaagggtatagcaaaattaattttcataggacaaaggtgatacataaatttacaaacttttctttt |
207 |
Q |
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| T |
27426267 |
atttcaaagcaggactagaacacat-attccta-caagggtatagcaaaattaattttcataggacaaaggtgaaacataaatttacaaagttttctttt |
27426364 |
T |
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| Q |
208 |
taataactacataacatagacatgaggtaacttcccttcataaacaacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacag |
307 |
Q |
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| T |
27426365 |
taataactacataacatagacatgaggtaacttcccttcataaagaacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacac |
27426464 |
T |
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| Q |
308 |
aggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagtacttagtaggctattttatatgacagggtttagtatgagaca |
407 |
Q |
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| T |
27426465 |
aggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagtacttagtaggctatattatatgacagggtttagtatgagaca |
27426564 |
T |
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| Q |
408 |
atggctcacgaacctccacatggtgttttag |
438 |
Q |
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| T |
27426565 |
atggctcacgaacctccacatggtgttttag |
27426595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 253 - 370
Target Start/End: Original strand, 27416260 - 27416377
Alignment:
| Q |
253 |
aacaagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagag |
352 |
Q |
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| T |
27416260 |
aacaagtacacaataccaattcatcaacaagggaaattatttcactgaatgacataggcctcattatatggttcctgttaggatatccttatctaaagaa |
27416359 |
T |
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| Q |
353 |
ttgaatggttagtactta |
370 |
Q |
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| T |
27416360 |
ttgaatggttagtactta |
27416377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 27420803 - 27420906
Alignment:
| Q |
256 |
aagtgcacaataacaattcagtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagttg |
355 |
Q |
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| T |
27420803 |
aagtgtacaataacaattcagtaacaaagtcaattgtttcactgaatgacataggctgcattctatggtgcctgttaggatatccttatctaaagaattg |
27420902 |
T |
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| Q |
356 |
aatg |
359 |
Q |
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|||| |
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| T |
27420903 |
aatg |
27420906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 27569575 - 27569459
Alignment:
| Q |
255 |
caagtgcacaataacaattc-agtaacaaggtcaattatttcactgaatgacagaggcctcattccatggtccctgttaggatatccttatttaaagagt |
353 |
Q |
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|||||||||||| ||||| | |||||||| |||||||||| |||| ||||||| | |||||||| ||||| ||||||||||||||||||| |||||| | |
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| T |
27569575 |
caagtgcacaattacaatgccagtaacaaagtcaattattccacttaatgacacattcctcattctatggttcctgttaggatatccttatctaaagaat |
27569476 |
T |
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| Q |
354 |
tgaatggttagtactta |
370 |
Q |
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| T |
27569475 |
tgaatggttactactta |
27569459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 27413358 - 27413423
Alignment:
| Q |
309 |
ggcctcattccatggtccctgttaggatatccttatttaaagagttgaatggttagtacttagtag |
374 |
Q |
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| T |
27413358 |
ggcctcattctatggttcctgttaggatatccttatcttaagaattgaatggttattactgagtag |
27413423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 27423591 - 27423637
Alignment:
| Q |
32 |
acttataaacttatgaaatacgactatatgagtaatgttgtttgcta |
78 |
Q |
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| T |
27423591 |
acttaaaaacttatgaaatatgactatatgagtaatgttgcttgcta |
27423637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 27413041 - 27413115
Alignment:
| Q |
32 |
acttataaacttatgaaatacgactatatgagtaatgttgtttgctaaaaggaaaaaat-actttgtattctgaa |
105 |
Q |
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| T |
27413041 |
acttagaaacttaagaaataggactatatgagtaatattgcttgctataattaaaaaatgacttggtattctgaa |
27413115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 27565640 - 27565598
Alignment:
| Q |
264 |
aataacaattcagtaacaaggtcaattatttcactgaatgaca |
306 |
Q |
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| T |
27565640 |
aataacaattcagtaacaaggtaaactattttactgaatgaca |
27565598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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