View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1023-Insertion-6 (Length: 464)
Name: NF1023-Insertion-6
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-6 |
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| [»] chr4 (5 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 63 - 464
Target Start/End: Original strand, 52740601 - 52741002
Alignment:
| Q |
63 |
ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca |
162 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740601 |
ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca |
52740700 |
T |
|
| Q |
163 |
tcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagct |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740701 |
tcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagct |
52740800 |
T |
|
| Q |
263 |
gttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740801 |
gttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagt |
52740900 |
T |
|
| Q |
363 |
tcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttcttgcgtccca |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740901 |
tcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattctttctcaaccttcttgatctcaatcttcttgcgtccca |
52741000 |
T |
|
| Q |
463 |
tg |
464 |
Q |
| |
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|| |
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| T |
52741001 |
tg |
52741002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 52740519 - 52740601
Alignment:
| Q |
8 |
aagcttcctccttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccacc |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52740519 |
aagcttcctccttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccacc |
52740601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 228 - 455
Target Start/End: Original strand, 13539369 - 13539596
Alignment:
| Q |
228 |
gaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaa |
327 |
Q |
| |
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||||||||||||||||||||| | ||||||||||| || || | | || ||| |||||| ||||| |||||||||||||| || |||||||| | |
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| T |
13539369 |
gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca |
13539468 |
T |
|
| Q |
328 |
tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattcttt |
427 |
Q |
| |
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|||||| |||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| || |||||| | | ||| |||| |
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| T |
13539469 |
ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt |
13539568 |
T |
|
| Q |
428 |
ctcaaccttcttgatctcaatcttcttg |
455 |
Q |
| |
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|||| |||||||||||| ||||||||| |
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| T |
13539569 |
gtcaatcttcttgatctcgatcttcttg |
13539596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 13539187 - 13539262
Alignment:
| Q |
19 |
ttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatc |
94 |
Q |
| |
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||||||| | ||||||| ||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| |
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| T |
13539187 |
ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatc |
13539262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 13539272 - 13539351
Alignment:
| Q |
119 |
caaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatctt |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| ||| ||||||| ||||| |||||||||| |||| |
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| T |
13539272 |
caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt |
13539351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 45393938 - 45394391
Alignment:
| Q |
8 |
aagcttcctccttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatcaccacccttgttg |
107 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
45393938 |
aagcttcctccttaactcgtaaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacc---cttgttg |
45394034 |
T |
|
| Q |
108 |
aaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatcttggtaggtca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | | ||| |
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| T |
45394035 |
aaaatcttagccaaattttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcg |
45394134 |
T |
|
| Q |
208 |
gaaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagttt |
307 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||| | ||||| |
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|
| T |
45394135 |
gagaattttctgctgactttgaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgcccaaaacagtagagttt |
45394234 |
T |
|
| Q |
308 |
gtcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtc |
407 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45394235 |
gtcaccaggggaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtg |
45394334 |
T |
|
| Q |
408 |
acttgtttctgtgattctttctcaaccttcttgatctcaatcttcttgcgtcccatg |
464 |
Q |
| |
|
|| |||| | || ||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
45394335 |
acaagtttgttggaatctttctcaaccttcttgatctcaatcttctggcgccccatg |
45394391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 9 - 451
Target Start/End: Complemental strand, 35782411 - 35781972
Alignment:
| Q |
9 |
agcttcctccttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatcaccacccttgttga |
108 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||| |||||| ||||||||| |||| |||||||| || ||||||||||| | ||| | | || |
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| T |
35782411 |
agcttcctctttaactcagaaatggactccataaattcttcaagctgatcactattcatctcatcaatagattcattccaccagttacc---catattcc |
35782315 |
T |
|
| Q |
109 |
aaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatcttggtaggtcag |
208 |
Q |
| |
|
||||||||| |||||||| |||||| | ||||||| |||||||| ||||||| |||| |||||||| |||||||| ||||||| |||| ||||||| |
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|
| T |
35782314 |
aaatcttagtcaaattttcaacatcagcaagtttctgtttttccatttccaacacctttagtgcctcctcatattgtttattgtactctttgtaggtcga |
35782215 |
T |
|
| Q |
209 |
aaaattttctgctacctttgaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttg |
308 |
Q |
| |
|
| ||||| | | | |||||| | ||||||||| ||||||| ||||||||||| || |||| || |||| |||| || ||||| ||||||| |
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|
| T |
35782214 |
agaatttcccgttgagtttgaaacatcaaactcaatggttccattgatgtagctattaaggatttggtcggtgtttggttcaccgaaacagtgtagtttg |
35782115 |
T |
|
| Q |
309 |
tcaccaggagaaaacacaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtca |
408 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||| | |
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|
| T |
35782114 |
ccagcaggagaaaacacgatgatggctgcatgaacatcacataaagtgcaaagttcactcgcttttcggaataaaccttgtcttctttttgagaaagtga |
35782015 |
T |
|
| Q |
409 |
cttgtttctgtgattctttctcaaccttcttgatctcaatctt |
451 |
Q |
| |
|
|||| || | | |||||| |||| ||| |||||||||||||| |
|
|
| T |
35782014 |
cttgcttgttggtttctttttcaagctttttgatctcaatctt |
35781972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 228 - 455
Target Start/End: Original strand, 9668345 - 9668572
Alignment:
| Q |
228 |
gaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaa |
327 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| || || | | || ||| |||||| ||||| |||||||||||||| || |||||||| | |
|
|
| T |
9668345 |
gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca |
9668444 |
T |
|
| Q |
328 |
tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattcttt |
427 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| || |||||| | | ||| |||| |
|
|
| T |
9668445 |
ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt |
9668544 |
T |
|
| Q |
428 |
ctcaaccttcttgatctcaatcttcttg |
455 |
Q |
| |
|
|||| |||||||||||| ||||||||| |
|
|
| T |
9668545 |
gtcaatcttcttgatctcgatcttcttg |
9668572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 9668163 - 9668238
Alignment:
| Q |
19 |
ttaactcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatc |
94 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
9668163 |
ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatc |
9668238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 9668248 - 9668327
Alignment:
| Q |
119 |
caaattttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatctt |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| ||||||||| ||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
9668248 |
caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt |
9668327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 47836428 - 47836263
Alignment:
| Q |
28 |
aaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatctt---agccaaatt |
124 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| || || |||| ||| |||||| | |
|
|
| T |
47836428 |
aaatggacaccataaattgttcaagcacttcactactcatattgtcaattgaatcattccaccaat---cacctttcttcaaaaacttggccgccaaaat |
47836332 |
T |
|
| Q |
125 |
ttgaacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgta |
193 |
Q |
| |
|
|| | ||||| |||||||||||| || | ||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
47836331 |
ttcagcatctgttagtttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgta |
47836263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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