View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-8 (Length: 622)
Name: NF1023-Insertion-8
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 6 - 621
Target Start/End: Complemental strand, 41622507 - 41621892
Alignment:
| Q |
6 |
caaatatttcccaagtgggaacttcatggaggttaattttcttcgacatccaagttactcgtggcgaagcatgtgcatagtaagagcgattttgagagaa |
105 |
Q |
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| T |
41622507 |
caaatatttcccaagtgggaacttcatggaggttaatattggtcgtaatccaagttactcgtggcgaagcatgtgcatagtaagagcgattttgagagaa |
41622408 |
T |
|
| Q |
106 |
gggtaccgattgaagattggtgatggtaaatcaatttcactttgaaygagccatggctttaaaatggcgaaaaattcattcctaattcaaacatgagtga |
205 |
Q |
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| T |
41622407 |
gggtgccgattgaagattggtgatggtaaatcaatttcactttgaatgagccatggctttaaaatggcaaaaaattcattcctaattcaaacatgagtga |
41622308 |
T |
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| Q |
206 |
acaagtattacaaataaaggttggtgacttgatcaataggcaaagtcgtgctggaacctagcaatagcagctcaggtgttgaatgtgttacatatgcagt |
305 |
Q |
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| T |
41622307 |
acaagtattacaaatgaaggttggtgacttgatcaataggcaaagtcgtgctggaacctagcaatagcagctcaggtgttgaatgtgttacatatgcagt |
41622208 |
T |
|
| Q |
306 |
agttgttgcaaactaatatgtataatgtggtacagctagatacccaaattttgaatgttgtgtcaaacagggtgtttccggtcaaaagcacttaccgact |
405 |
Q |
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| T |
41622207 |
agttgttgcaaactaatatgtataatgtggtacagctagatacccaaattttgaatgttgtgtcaaacagggtgtttccggtcaaaagcacttaccgact |
41622108 |
T |
|
| Q |
406 |
gtgcatcaatgacttagtcgattccaatcatctatgtgttaaaggtaattggaactggatttgtaatttgcatactttatgtggagggtgtgtaaagatg |
505 |
Q |
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| T |
41622107 |
gtgcatcaatgacttagtcgattccaatcatctatgtgttaaaggtaattggaactggatttgtaatttgcatactttatgtggagggcgtgtaaagatg |
41622008 |
T |
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| Q |
506 |
ttaaaccaactacaacacggttgagagagaaggaagtcatctgtcctagtgagaatgcgggtaaagcactttatgtggagggcgttagagatgttaagcc |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41622007 |
ttaaaccaactacaacacggttgagagagaaggaagtcatttgtcctagtgagaatgcgggtaaagcactttatgtggagggcgttagagatgttaagcc |
41621908 |
T |
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| Q |
606 |
aactgcaacaaagttg |
621 |
Q |
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| T |
41621907 |
aactgcaacaaagttg |
41621892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 479 - 562
Target Start/End: Complemental strand, 41621940 - 41621858
Alignment:
| Q |
479 |
actttatgtggagggtgtgtaaagatgttaaaccaactacaacacggttgagagagaaggaagtcatctgtcctagtgagaatg |
562 |
Q |
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| T |
41621940 |
actttatgtggagggcgt-tagagatgttaagccaactgcaacaaagttgagagagaaggatatcatttgtcctagtgagaatg |
41621858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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