View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1023-Insertion-9 (Length: 790)
Name: NF1023-Insertion-9
Description: NF1023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1023-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 790
Target Start/End: Original strand, 15107392 - 15108188
Alignment:
| Q |
8 |
tttcttaccatgcaaacaatttgtataaagaatggttgaaaaagatataaatgatgaaattaagagataaagtatttttattgtaccaattctcatttgt |
107 |
Q |
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| T |
15107392 |
tttcttaccatgcaaacaatttgtataaagaatggttgaaaaagatataaatgatgaaattaagagagaaagtatttttattgtaccaattctcatttgt |
15107491 |
T |
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| Q |
108 |
ggatgaaaaaatgtgactgcaacctatttgtattggttatttgttagttaagtaacaaattcaactaactaattaattaactatgtaactaaaaaggtgt |
207 |
Q |
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| T |
15107492 |
gaatgaaaaaatgtgactgcaacctatttatattggttatttgttagttaagtaacaaattcaactaactaattaattaaccatgtaactaaaaa-gtgt |
15107590 |
T |
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| Q |
208 |
tgactcatttttatgattagttgggagataatatgtacgtatttaaagaattaattaagggaaaa-ataaacgacacaattaagtaaattatactagttc |
306 |
Q |
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| T |
15107591 |
tgaccca-ttttatgattagatgggagataatgtgcacgtatgtaaagagttaattaaggaaaaagataaacgacacaattaagtaaattatactagttc |
15107689 |
T |
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| Q |
307 |
acttcataatttgaagttagtcaaattctcttgcacttttgagaaatttcattatgatccaacatattataacaataaacactaagcctacatataattt |
406 |
Q |
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| T |
15107690 |
acttcataatctgaagttagtccaattctctcgcactttcgagaaatttcattataatccaacatattataataataaacactaagactacatataattt |
15107789 |
T |
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| Q |
407 |
nnnnnnntcttccaataattttgattatattaactacaacaattaattaatttctaatgattagcaattaactcagaatatta-----gtcttaagcttc |
501 |
Q |
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| T |
15107790 |
-aaaaaatctttcaataattttgattataatagctacaacaattaattaatttctaatgatcagcaattaactcaaaatatcaataaggtctaacgcttc |
15107888 |
T |
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| Q |
502 |
caaacagcaagcacaagtaacactagaagagtgatagcaaagttaacaataaacactacttcattgtttcannnnnnnnaactttttgtaccaatttcaa |
601 |
Q |
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| T |
15107889 |
caaacaacgagcacgagtaacactagaagagtgatagcgaagttaacaataaacactacttcattgtttcatttttttttactttttataccaatttcaa |
15107988 |
T |
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| Q |
602 |
caatagaataagtcctc-aagatacaaaagtagaaaagaaataaatacacg-aaaaacattacgaccgataattagga-tcaacatg-caaagaagggcg |
697 |
Q |
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| T |
15107989 |
caatagaataagtcctcaaagatacaaaagtagaaaagaaataaatacacgaaaaaacattacgaccgagaattaggattaaacatgtcaaaggaatgct |
15108088 |
T |
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| Q |
698 |
ttgt------ctttggaacagagggaaagtgagggctttgggtgtgggaaatatataagaaaatggaaaatcttt-atattttttgaaagaatatttttt |
790 |
Q |
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| T |
15108089 |
ttgtttgagagtttggaacagagggaaaatgagcgctttgggagtgggaaatatataggaaaataaaaaatctttcatattttttgaaagaataattttt |
15108188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 37856864 - 37856743
Alignment:
| Q |
58 |
atgatgaaattaagagataaagtatttttattgtaccaattctcatttgtggatgaaaaaatgtgactgcaacctatttgtattggttatttgttagtta |
157 |
Q |
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| T |
37856864 |
atgatgaaattgagagagaaaatatttttgttgtatcaattctcattagtgaataaaaaagtgtgattacaacttatttatagtggttacttgttagtta |
37856765 |
T |
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| Q |
158 |
agtaacaaattcaactaactaa |
179 |
Q |
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| T |
37856764 |
agtaacaaactcaactcactaa |
37856743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 18099256 - 18099136
Alignment:
| Q |
58 |
atgatgaaattaagagataaagtatttttattgtaccaattctcatttgtggatgaaaaaatgtgactgcaacctatttgtattggttatttgttagtta |
157 |
Q |
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| T |
18099256 |
atgatgaaattgagagagaaaatattttg-ttgtatcaattctcattagtgaataaaaaagtgtgattacaacttatttatagtggttacttgttagtta |
18099158 |
T |
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| Q |
158 |
agtaacaaattcaactaactaa |
179 |
Q |
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| T |
18099157 |
agtaacaaactcaactcactaa |
18099136 |
T |
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Back To:
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