View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10230_high_14 (Length: 227)
Name: NF10230_high_14
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10230_high_14 |
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| [»] scaffold0115 (2 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5723 - 5497
Alignment:
| Q |
1 |
acaatagcagcaaatcaccttctggttctatgttggttgcatttcctaatttggatatcattaccttgagctcattaaattggaacaaagtttggggtga |
100 |
Q |
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| T |
5723 |
acaatagcagtaaatcaccctctggttctatgttggttgcatttcctaatttggatatccttaccttgagctcattaaattggaacaaagtttggggtga |
5624 |
T |
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| Q |
101 |
caatcaacattccttttgcaaattgacaaatttggttgtggataattgtggtgagttaaagtacttattcttgccctcctttggttggaaattagttaat |
200 |
Q |
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| T |
5623 |
caatcaacattcattttgcaaattgacaaatttggttgtggataattatggtgagttaaggtacttattcttgccctcctttggttggaaattagtgaat |
5524 |
T |
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| Q |
201 |
gttctttgatggtggagataatagcta |
227 |
Q |
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| T |
5523 |
gttctttgatggtggagataatagcta |
5497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13463 - 13237
Alignment:
| Q |
1 |
acaatagcagcaaatcaccttctggttctatgttggttgcatttcctaatttggatatcattaccttgagctcattaaattggaacaaagtttggggtga |
100 |
Q |
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| T |
13463 |
acaatagcagtaaatcaccctctggttctatgttggttgcatttcctaatttggatatccttaccttgagctcattaaattggaacaaagtttggggtga |
13364 |
T |
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| Q |
101 |
caatcaacattccttttgcaaattgacaaatttggttgtggataattgtggtgagttaaagtacttattcttgccctcctttggttggaaattagttaat |
200 |
Q |
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| T |
13363 |
caatcaacattcattttgcaaattgacaaatttggttgtggataattatggtgagttaaggtacttattcttgccctcctttggttggaaattagtgaat |
13264 |
T |
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| Q |
201 |
gttctttgatggtggagataatagcta |
227 |
Q |
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| T |
13263 |
gttctttgatggtggagataatagcta |
13237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8480578 - 8480360
Alignment:
| Q |
1 |
acaatagcagcaaatcaccttctggttctatgttggttgcatttcctaatttggatatcattaccttgagctcat---taaattggaacaaagtttgggg |
97 |
Q |
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| T |
8480578 |
acaatagcagcaaatcaccctctgattctatgttggttgcatttcataatttggatatccttaccttgagctcatcattaaattggaacaaagtttgggg |
8480479 |
T |
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| Q |
98 |
tgacaatcaacattccttttgcaaattgacaaatttggttgtggataattgtggtgagttaaagtacttattcttgccctcctttggttggaaattagtt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8480478 |
tgacaatcaacattccttttgcaaattgacaaatttcgttgtggataattgtggtgagttaaagtacttattcttgccctcctttggttggaaattagta |
8480379 |
T |
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| Q |
198 |
aatgttctttgatggtgga |
216 |
Q |
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| T |
8480378 |
aatgttctttgatggtgga |
8480360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 19345244 - 19345091
Alignment:
| Q |
26 |
ttctatgttggttgcatttcctaatttggatatcattaccttgagctcattaaattggaacaaagtttggggtgacaatcaacattccttttgcaaattg |
125 |
Q |
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|||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |
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| T |
19345244 |
ttctatgtaggttgcacttcctaatttggatacccttaccttgagctcattaaatttgagcaaagtttggggtgacaatcaacattccttttacaaattg |
19345145 |
T |
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| Q |
126 |
acaaatttggttgtggataattgtggtgagttaaagtacttattcttgccctcc |
179 |
Q |
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| T |
19345144 |
acaaatttggttgtggataattgtggtgagttaaagtacttattcttgtcctcc |
19345091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 19345057 - 19345018
Alignment:
| Q |
188 |
gaaattagttaatgttctttgatggtggagataatagcta |
227 |
Q |
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| T |
19345057 |
gaaattagtaaatgttctttgatggtggagataatagcta |
19345018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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