View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10230_high_7 (Length: 275)
Name: NF10230_high_7
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10230_high_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 46343943 - 46344217
Alignment:
| Q |
1 |
tgatatagttgacagcaataagtttatgttaggactctatttgacaaaatcactaattaccagagattttacaaaaattacactttgaagctttaacaaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46343943 |
tgatatagttgacaacaataagtttatgttaggactctatttgacaaaatcactaattaccagagattttacaaaaattacactttgaagctttaacaaa |
46344042 |
T |
|
| Q |
101 |
atagtctaccacaattcaaaacatgcatttagaatatgtagggttagaacttagaacctagaaggattcaactacatcacttttttctgatttagtaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344043 |
atagtctaccacaattcaaaacatgcatttagaatatgtagggttagaacttagaacctagaaggattcaactacatcacttttttctgatttagtaact |
46344142 |
T |
|
| Q |
201 |
tcatccaagattcattgttattgaaaaagttgagttgtgaagagtctggatattgatagtgccctacttctcttc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344143 |
tcatccaagattcattgttattgaaaaagttgagttgtgaagagtctggatattgatagtgccctacttctcttc |
46344217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University