View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10230_high_8 (Length: 262)
Name: NF10230_high_8
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10230_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 83 - 248
Target Start/End: Complemental strand, 2451449 - 2451284
Alignment:
| Q |
83 |
cacacccatgatcagattaaggataatcgatcaaacacaagactcccacagaaggtgaaagggaccttagaagagagaacaattgaaaatttgttcttgt |
182 |
Q |
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| T |
2451449 |
cacacccatgatcagattaaggataatcgatcaaacacaagactcccacagaaggtgaaagggaccttagaagagagaacaattgaaaatttgttcttgt |
2451350 |
T |
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| Q |
183 |
tttccaattttcacttcatacctagctaagaccaagatgattggaaaacaaacgtgaattgtttat |
248 |
Q |
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| T |
2451349 |
tttccaattttcacttcatacctagctaagaccaagatgattggaaaacaaacgtgaattgtttat |
2451284 |
T |
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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 23730041 - 23729998
Alignment:
| Q |
165 |
ttgaaaatttgttcttgttttccaattttcacttcatacctagc |
208 |
Q |
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| T |
23730041 |
ttgaaaatttgttcttgttttccaattttcacttcatacctagc |
23729998 |
T |
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