View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10230_low_1 (Length: 720)
Name: NF10230_low_1
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10230_low_1 |
 | |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 605; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 710
Target Start/End: Original strand, 29469984 - 29470676
Alignment:
| Q |
18 |
aaattctataaataggtgtgttgaagcactaacatatgtacatgtattttggtgttttgtgctttttcatgctaaaagggaacaagtaaaattgaaatca |
117 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29469984 |
aaattctataaataggtgagttgaagtactaacatatgtacatgtattttggtattttgtgctttttcatgctaaaagggaacaagtaaaattgaaatca |
29470083 |
T |
|
| Q |
118 |
tatgtccaagctcccggattgaagtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacactaattattatggatggccaatttactga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29470084 |
tatgtccaagctcccggattgaagtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacactaattattatggatggccaatttactga |
29470183 |
T |
|
| Q |
218 |
aagtcccaaaaatcttccgaacagtctaagaatacttgaacatcacctatatccttcatggggtttaccgtctcaattttatccaagaaaacttgccata |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29470184 |
gagtcccaaaaatcttccgaacagtctaagaatacttgaacatcacctatatccttcatggggtttaccgtctcaattttatccaagaaaacttgccata |
29470283 |
T |
|
| Q |
318 |
tgcaagattccgtcttactctacatcattcgcctgggaggactttttcaagaaggcaagtgtgatatatttattttcccattgtatattaatatatccac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
29470284 |
tgcaagattccgtcttactctacatcattcgcgtgggatgactttttcaagaaggcaagtgtgatatatttattttcccatcgtatatcaatatatccac |
29470383 |
T |
|
| Q |
418 |
tttcttatttgtttgttggttcttatcnnnnnnnnnnnngcagaagttcaagaatataagggttttaagttttgatcaccacaaatctttaacacggata |
517 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29470384 |
tttcttatttgtttgttggttcttatctttgtcttttttgcagaagttcaagaatataagggttttaagttttgatcaccacaaatctttaacacggata |
29470483 |
T |
|
| Q |
518 |
cctgacatatctggtcttgtaaatttagaagaactttcttttcaagattgtgtgaatttaatcacagtcgatgactccgttgggtttctgggtaatctta |
617 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29470484 |
cctgacatatctggtctcgtaaatttagaagaactttcttttcaagattgtgtgaatttaatcacagtcgatgactccgttgggtttctgggtaatctta |
29470583 |
T |
|
| Q |
618 |
aaaccttgagagctatgcgttgcatcaaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttctt |
710 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29470584 |
aaaccttaagagctatgcgttgcatcaagctcaggagtattccgcctctcaagttggcttctctggaagaactcgatctttcacagtgttctt |
29470676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 457 - 708
Target Start/End: Complemental strand, 29664408 - 29664157
Alignment:
| Q |
457 |
gcagaagttcaagaatataagggttttaagttttgatcaccacaaatctttaacacggatacctgacatatctggtcttgtaaatttagaagaactttct |
556 |
Q |
| |
|
|||||||||||| |||| |||||||| | |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||| |||| |
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| T |
29664408 |
gcagaagttcaaatatatgagggttttgaattttgatcaccatgggcttttaacacagatacctgacgtatctggtctcgtaaatttagaagaattttcc |
29664309 |
T |
|
| Q |
557 |
tttcaagattgtgtgaatttaatcacagtcgatgactccgttgggtttctgggtaatcttaaaaccttgagagctatgcgttgcatcaaactcaggagta |
656 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| ||||||| || |||| ||||||||||| |||| |||| |||||||||| |||||||||| |
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| T |
29664308 |
tttcaaggttgtgtgaatttaatcacagtccatgactccattgggttgctaggtagacttaaaaccttaagagttatgtgttgcatcaagctcaggagta |
29664209 |
T |
|
| Q |
657 |
ttccgcccctcaagttggcttctatggaagaactcgatctttcacagtgttc |
708 |
Q |
| |
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|||| || ||||| ||||||||| | |||||||| ||||||||| ||||||| |
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| T |
29664208 |
ttccacctctcaacttggcttctctagaagaacttgatctttcagagtgttc |
29664157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 29673167 - 29673111
Alignment:
| Q |
134 |
gattgaagtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacact |
190 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
29673167 |
gattgaagtacaatgggatggagaagctttcaagaagatggaaaatctcaaaacact |
29673111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 28489795 - 28489745
Alignment:
| Q |
140 |
agtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacact |
190 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||| |||| |||||| |
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| T |
28489795 |
agtagaatgggatggagaagctttcaagaagatggaaaatctcaaaacact |
28489745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 29757999 - 29757945
Alignment:
| Q |
140 |
agtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacactaatt |
194 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||| |||| |||||||||| |
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| T |
29757999 |
agtagcatgggatggagaagctttcaagaagatggaaaatctcaaaacactaatt |
29757945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 29802205 - 29802155
Alignment:
| Q |
140 |
agtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacact |
190 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||| |||| |||||| |
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| T |
29802205 |
agtagaatgggatggagaagctttcaagaagatggaaaatctcaaaacact |
29802155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 579
Target Start/End: Original strand, 2187098 - 2187176
Alignment:
| Q |
501 |
aatctttaacacggatacctgacatatctggtcttgtaaatttagaagaactttcttttcaagattgtgtgaatttaat |
579 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||| ||| ||| || |||| ||||||| ||||||||| |
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| T |
2187098 |
aatctttaacacagatacttgacatatctggtctcttaaatttggaaatactgtcatttcgagattgttcgaatttaat |
2187176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 5921785 - 5921640
Alignment:
| Q |
90 |
taaaagggaacaagtaaaattgaaatcatatgtccaagctcccggattgaagtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacac |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5921785 |
taaaagggaacaagtaaaattgaaatcatatatttggattcctccattgaagtaaaatgggatgaagaggctttcaagaagatggaaaacctcagaacgc |
5921686 |
T |
|
| Q |
190 |
taattattatggatggccaatttactgaaagtcccaaaaatcttcc |
235 |
Q |
| |
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||||||||| | |||| ||| |||||||||||||| ||||||| |
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| T |
5921685 |
taattattaggcatggtgctttttctgaaagtcccaaatatcttcc |
5921640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 700
Target Start/End: Complemental strand, 5921339 - 5921149
Alignment:
| Q |
510 |
cacggatacctgacatatctggtcttgtaaatttagaagaactttcttttcaagattgtgtgaatttaatcacagtcgatgactccgttgggtttctggg |
609 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||||||| |||||| |||||| ||| ||||| ||| | |||||||| |||||||| | | |
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|
| T |
5921339 |
cacggatgcccgacatatctggtctcctaaatttagaagaactttcatttcaatattgtgagaacttaattacaatggatgactcggttgggttgttagc |
5921240 |
T |
|
| Q |
610 |
taatcttaaaaccttgagagctatgcgttgcatcaaactcaggagtattccgcccctcaagttggcttctatggaagaactcgatctttca |
700 |
Q |
| |
|
||| ||||||| |||||||| | |||||| || |||| |||| |||| || |||||||||| ||| | |||||||||||||||||| |
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|
| T |
5921239 |
taaacttaaaatcttgagagttggaagttgcaagaagctcaagagtcttccacctctcaagttggtttcgctagaagaactcgatctttca |
5921149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 13717979 - 13718174
Alignment:
| Q |
21 |
ttctataaataggtgtgttgaagcactaacatatgtacatgtattttggt-gttttgtgctttttcatgctaaaagggaacaagtaaaattgaaatcata |
119 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||||||||| ||||||| | | |||||||||| || || | ||| |||| ||||||||||||||||||| |
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|
| T |
13717979 |
ttctctaaataggagtgttgaagttctaacatatgtacatttattttgtttgatttgtgctttatcgtgtttaaaaggaagaagtaaaattgaaatcata |
13718078 |
T |
|
| Q |
120 |
tgtccaagctcccggattgaagtagaatgggatgaagaggctttcaagaagatggaaaacctcaga--acactaattattatggatggccaatttactga |
217 |
Q |
| |
|
||| || |||| || ||||||||| |||||||||||||||||||||| |||||| | |||||||||||| || |||| ||||||||||| |
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|
| T |
13718079 |
cgtcaaaactcctgggttgaagtag----------agaggctttcaagaagatggaatacctcataacacactaattattttgtatggtcaatttactga |
13718168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 12590836 - 12590890
Alignment:
| Q |
140 |
agtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacactaatt |
194 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
12590836 |
agtagaatgggatgaagaagctttcaagaagatggaaaatctcaaaacactaatt |
12590890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 211151 - 211097
Alignment:
| Q |
140 |
agtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacactaatt |
194 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
211151 |
agtagcatgggatggagaagctttcaagaagatggaaaatctcaaaacactaatt |
211097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 237837 - 237783
Alignment:
| Q |
140 |
agtagaatgggatgaagaggctttcaagaagatggaaaacctcagaacactaatt |
194 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||| || | |||||||||| |
|
|
| T |
237837 |
agtagaatgggatggagaagctttcaagaagatgaaaaatctgaaaacactaatt |
237783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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