View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10230_low_16 (Length: 238)
Name: NF10230_low_16
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10230_low_16 |
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| [»] scaffold0115 (2 HSPs) |
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| [»] scaffold0406 (1 HSPs) |
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| [»] scaffold0069 (1 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 5285 - 5480
Alignment:
| Q |
16 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5285 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggatagtcgaacctatgattgcaaatttataaactcataaataac |
5384 |
T |
|
| Q |
116 |
tagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaattagaatacctcttttgatgcatcagtaaggtt |
211 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5385 |
tagtatcgttataaatattcatttaaacgctagagcaaaattggaatgttcccaatggtagaattatcatacctcttttgatgcatcagtaaggtt |
5480 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 13025 - 13220
Alignment:
| Q |
16 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13025 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggatagtcgaacctatgattgcaaatttataaactcataaataac |
13124 |
T |
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| Q |
116 |
tagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaattagaatacctcttttgatgcatcagtaaggtt |
211 |
Q |
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| T |
13125 |
tagtatcgttataaatattcatttaaacgctagagcaaaattggaatgttcccaatggtagaattatcatacctcttttgatgcatcagtaaggtt |
13220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 8480155 - 8480352
Alignment:
| Q |
16 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8480155 |
ggtgccatattgtcttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
8480254 |
T |
|
| Q |
116 |
tagtatcgttataaata-tttatttaaatgctagagcaaaattggaatgttcccaatggtagaattagaatacctcttttgatgcatcagtaaggttg |
212 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
8480255 |
tagtatcgttataaatattttatttaaatgctacagcaaaattggaatgtttccaatggtagaattagcatacctcttttgatgcataagtaaggttg |
8480352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 19344809 - 19345003
Alignment:
| Q |
16 |
ggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataac |
115 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |
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| T |
19344809 |
ggtgccatattgtcttcaagttctccatgtcattcaatatgatttcctctaatttggagaatcgaacctatgattgaaaatttatgaactcataaataac |
19344908 |
T |
|
| Q |
116 |
tagtatcgttataaatatttatttaaatgctagagcaaaattggaatgttcccaatggtagaattagaatacctcttttgatgcatcagtaaggtt |
211 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| || ||| |||||||||||||||||||||||||||| |
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| T |
19344909 |
tagtatcgttataaatatttatttaaatgctagtgcaaaattggaatattcctaatggta-aagtagcatacctcttttgatgcatcagtaaggtt |
19345003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13420948 - 13420896
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
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|
||||||||||| |||||||| ||||| || ||||||||||||| ||||||||| |
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|
| T |
13420948 |
tgccatattgtcttcaagttgtccatatccttcaatatgattttctctaattt |
13420896 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13543446 - 13543394
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
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|
||||||||||| |||||||| ||||| || ||||||||||||| ||||||||| |
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| T |
13543446 |
tgccatattgtcttcaagttgtccatatccttcaatatgattttctctaattt |
13543394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 16497158 - 16497209
Alignment:
| Q |
20 |
ccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttg |
71 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||||| ||| |||||| |
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| T |
16497158 |
ccatattgtcttcaagttgtccatgtccttcaatatgattttctccaatttg |
16497209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13670606 - 13670554
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
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| T |
13670606 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
13670554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 15899210 - 15899262
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
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|
||||||| ||| |||||||| ||||| || ||||||||||||| ||||||||| |
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|
| T |
15899210 |
tgccatactgtcttcaagttgtccatatccttcaatatgattttctctaattt |
15899262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 20477574 - 20477522
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
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|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
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|
| T |
20477574 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
20477522 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 7835 - 7887
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||| |||||||| ||||||||| |
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| T |
7835 |
tgccatattgtcttcaagttgtccatatccttcagtatgattttctctaattt |
7887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 26600 - 26548
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
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|
| T |
26600 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
26548 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 115820 - 115768
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
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|
| T |
115820 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
115768 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 168220 - 168168
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
| |
|
||||||||||| |||||| | ||||| || ||||||||||||| ||||||||| |
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|
| T |
168220 |
tgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt |
168168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 38057855 - 38057907
Alignment:
| Q |
18 |
tgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt |
70 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||||||||||| |||||||| |
|
|
| T |
38057855 |
tgccatattgtcttcaagttgtccatatccttcaatatgattttttctaattt |
38057907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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