View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10230_low_17 (Length: 229)
Name: NF10230_low_17
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10230_low_17 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 11103315 - 11103098
Alignment:
| Q |
12 |
ataggtaggatcagctttgccacggattttaggaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaacaat |
111 |
Q |
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| T |
11103315 |
ataggtaggatcagctttgccacggattttaggaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaataat |
11103216 |
T |
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| Q |
112 |
agcaccactaataaccttattatagattgagcctcacgagccatattttttccttcttttgggtcgtatgtgaaagtgggaaatttaattgtttggagag |
211 |
Q |
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| T |
11103215 |
agcaccactaataaccttattatagattgagcctcatgagccatattttttccttcttttgggtcgtatgtgaaagtgggaaatttaattgtttggagag |
11103116 |
T |
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| Q |
212 |
aagaagagacaatttttc |
229 |
Q |
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| T |
11103115 |
aagaagagacaatttttc |
11103098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 11589762 - 11589592
Alignment:
| Q |
12 |
ataggtaggatcagctttgccacggattttaggaaaccattttagattgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaacaat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
11589762 |
ataggtaggatcagctttgccacggattttaggaaaccattttagattgaaagtatttgtgggcatcattatccaaatcataatacaacccagaaataat |
11589663 |
T |
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| Q |
112 |
agcaccactaataaccttattatagattgagcctcacgagccatattttttccttcttttgggtcgtatgt |
182 |
Q |
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| T |
11589662 |
agcaccactaataaccttattatagattgagcctcacgattcatattttttccttcttttgggtcgtatgt |
11589592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 11115145 - 11115062
Alignment:
| Q |
58 |
ttgaaagtatttgtaggcatcattatccaaatcataatacaacccagaaacaatagcaccactaataaccttattatagattga |
141 |
Q |
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| T |
11115145 |
ttgaaagtatatgtaggcatcattataaaaatgaaaattaaacccagaaacagtaacaccatcaataaccttattgtagattga |
11115062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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