View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10230_low_19 (Length: 228)

Name: NF10230_low_19
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10230_low_19
NF10230_low_19
[»] chr7 (13 HSPs)
chr7 (18-213)||(31594923-31595118)
chr7 (20-207)||(31604538-31604725)
chr7 (20-207)||(31614413-31614600)
chr7 (20-213)||(31608123-31608319)
chr7 (20-213)||(31618136-31618329)
chr7 (20-213)||(31575863-31576059)
chr7 (18-207)||(31532268-31532460)
chr7 (20-213)||(31585273-31585469)
chr7 (20-213)||(31540888-31541081)
chr7 (23-131)||(31573006-31573114)
chr7 (90-207)||(31439256-31439373)
chr7 (18-202)||(33305316-33305497)
chr7 (98-205)||(21898516-21898623)
[»] chr1 (1 HSPs)
chr1 (18-213)||(52174478-52174673)
[»] chr4 (1 HSPs)
chr4 (18-205)||(15063531-15063718)
[»] scaffold0394 (1 HSPs)
scaffold0394 (18-205)||(1816-2003)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 31595118 - 31594923
Alignment:
Q  18 acagttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggattta 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  31595118 acagttatggtatgttgattcttgaaatgattggaggaagaaagaactatcaaactggagggtcgtgtacttctgaaatgtactttccagactggattta 31595019  T
Q  118 taaggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31595018 taaggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatg 31594923  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 31604725 - 31604538
Alignment:
Q  20 agttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggatttata 119  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||  | | ||| ||||| ||||| |||||||||||||||||||| ||||||||||    
T  31604725 agttatggcatgttgattcttgaaatgatcggaggaaggaagaactacgacactggcgggtcatgtacttctgaaatgtactttccagattggatttata 31604626  T
Q  120 aggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgag 207  Q
    ||||||||||||||||||||  ||||||||||| || |||| | || |||||||||||||||||||| | |||||||||| |||||||    
T  31604625 aggatcttgagcaaggtaatactcttttaaattgttcgacagtctcggaggaagaaaatgatatggtcagaaagattactttggtgag 31604538  T

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Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 31614600 - 31614413
Alignment:
Q  20 agttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggatttata 119  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| | | ||||||||| || || |||||||||||||||||||| ||||||||||    
T  31614600 agttatggaatgttgattcttgaaatgattggaggaagaaagaactatgacactggagggtcatgcacttctgaaatgtactttccagattggatttata 31614501  T
Q  120 aggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgag 207  Q
    || |||||||||||  |||   ||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||| |||||||    
T  31614500 agaatcttgagcaaaataacactcttttaaattgtttgacaatctcagaggaagaaaatgatatgattagaaagatcactttggtgag 31614413  T

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Target: chr7; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 31608319 - 31608123
Alignment:
Q  20 agttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggatttata 119  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||  | | ||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  31608319 agttatggcatgttgattcttgaaatgattggaggaaggaagaactacgacactggcgggtcatgtacttctgaaatgtactttccagactggatttata 31608220  T
Q  120 aggatcttgagcaaggta---atgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatg 213  Q
    ||||||||||||||||||   ||  | ||||||||   |||||||| |||  |||||||||||||||||||| |||||||||||||||||| |||||    
T  31608219 aggatcttgagcaaggtaaccatactgttttaaatgggttgacaatctcaacggaagaaaatgatatggttagaaagattactatggtgagtctatg 31608123  T

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Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 31618329 - 31618136
Alignment:
Q  20 agttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggatttata 119  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||  | |  |||||||| ||||| |||||||||||||||||||| ||||||||||    
T  31618329 agttatggcatgttgattcttgaaatgatcggaggaaggaagaactacgacacgggagggtcatgtacttctgaaatgtactttccagattggatttata 31618230  T
Q  120 aggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatg 213  Q
    |||||||||||||||| |||  ||||||||||| ||  ||||| || |||||||||||||||||| | | |||||||||| ||||||| |||||    
T  31618229 aggatcttgagcaagggaatactcttttaaattgttcaacaatctcggaggaagaaaatgatatgatcagaaagattactttggtgagtctatg 31618136  T

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Target: chr7; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 31576059 - 31575863
Alignment:
Q  20 agttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggatttata 119  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| | | |||||||||||||||  | |||||||| |||||||| ||||||||||    
T  31576059 agttatggcatgttgattcttgaaatgatcggaggaaggaagaactatgacactggagggtcgtgtactccggaaatgtattttccagattggatttata 31575960  T
Q  120 aggatcttgagcaaggtaatgat---cttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatg 213  Q
    |||||||||||||||||||| ||   ||||| || | | |||||   ||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  31575959 aggatcttgagcaaggtaataataacctttttaactgtatgacatcgtcagaggaagaaaatgatatggttagaaagattactttggtgagtctatg 31575863  T

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Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 31532460 - 31532268
Alignment:
Q  18 acagttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggattta 117  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||||| ||| | | ||||||||| ||||| ||||||||||||||||| |||||||||||    
T  31532460 acagttatgggatgttaattctagaaatgattggaggaagaaagaattatgacactggagggtcatgtacttctgaaatgtactttcctgactggattta 31532361  T
Q  118 taaggatcttgagcaaggtaatgat---cttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgag 207  Q
    |||||||||||| ||||||||| ||   ||| | |||| |||   || |||||||||||||||||||||||| | ||||||||||||||||||    
T  31532360 taaggatcttgaacaaggtaataataaccttgtgaattatttagaaaattcagaggaagaaaatgatatggtgagaaagattactatggtgag 31532268  T

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Target: chr7; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 31585469 - 31585273
Alignment:
Q  20 agttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggatttata 119  Q
    |||||||||||| ||||||| ||||| || ||||| || ||||||||  | |  ||||| || ||| | |||||||||||||||||||| ||||||||||    
T  31585469 agttatggcatgctgattctagaaattatcggaggtaggaagaactacgacacaggaggttcatgtgcttctgaaatgtactttccagattggatttata 31585370  T
Q  120 aggatcttgagcaaggtaatga---tcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatg 213  Q
    ||||||||||||||||||||||   ||||||||||| ||||||||| || || ||||||||||| ||||||| ||||||||||||||| || |||||    
T  31585369 aggatcttgagcaaggtaatgaacctcttttaaattgtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtctatg 31585273  T

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Target: chr7; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 31541081 - 31540888
Alignment:
Q  20 agttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggatttata 119  Q
    |||||||| ||||| ||||| |||||| |||| ||||||||||| ||| | | ||||||||| ||||| ||||||||||  |||||||| ||||||||||    
T  31541081 agttatggtatgttaattctagaaatggttgggggaagaaagaattatgacactggagggtcatgtacttctgaaatgtgttttccagattggatttata 31540982  T
Q  120 aggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatg 213  Q
    ||||||||||||||| |||| | |||   |||| |||  |||  ||| ||||||||||||||||||| | || ||||||||||||||| |||||    
T  31540981 aggatcttgagcaagctaataaccttgctaattgtttagcaaactcaaaggaagaaaatgatatggtaagaatgattactatggtgagtctatg 31540888  T

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Target: chr7; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 31573006 - 31573114
Alignment:
Q  23 tatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggatttataagg 122  Q
    ||||| ||||| ||| | ||||||||||| ||||||||||||||| | |  |||||||||||||| |||||||||||||||||||| ||||||||||| |    
T  31573006 tatggtatgttaattttagaaatgattggtggaagaaagaactatgacacaggagggtcgtgtacttctgaaatgtactttccagattggatttataatg 31573105  T
Q  123 atcttgagc 131  Q
    |||||||||    
T  31573106 atcttgagc 31573114  T

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Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 207
Target Start/End: Original strand, 31439256 - 31439373
Alignment:
Q  90 ctgaaatgtactttccagactggatttataaggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaa 189  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||||  ||||| ||||  ||| ||||| || || |||||||||||||| || ||    
T  31439256 ctgaaatgtactttccggattggatatataaggatcttgagcaaggtaatactctttcaaataatttaacaatctccgaagaagaaaatgatatcgtaaa 31439355  T
Q  190 aaagattactatggtgag 207  Q
     |||||||||||||||||    
T  31439356 gaagattactatggtgag 31439373  T

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Target: chr7; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 33305316 - 33305497
Alignment:
Q  18 acagttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggattta 117  Q
    |||||||||| ||||| || || |||||||| || ||||||||||| ||| | |  |||||||| |||||||| |||||||||||| |||| ||||||||    
T  33305316 acagttatggtatgttaatactagaaatgatcgggggaagaaagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggattta 33305415  T
Q  118 taaggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatg 202  Q
    |||||||||||||| | ||||| | |||   |||| ||   |||  ||||| ||||||||||||||||  | |||||||||||||    
T  33305416 taaggatcttgagctaagtaataacctt---aattgttctgcaaactcagaagaagaaaatgatatggcaagaaagattactatg 33305497  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 21898516 - 21898623
Alignment:
Q  98 tactttccagactggatttataaggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagatta 197  Q
    ||||||||||||||||| ||||| |||||| | ||||||||  | ||| | ||||||||   ||||||||||||||| ||||||||  |   ||||||||    
T  21898516 tactttccagactggatctataatgatcttcaacaaggtaacaaccttgtgaattcttttgaaatttcagaggaagagaatgatataatacgaaagatta 21898615  T
Q  198 ctatggtg 205  Q
    ||||||||    
T  21898616 ctatggtg 21898623  T

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Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 52174478 - 52174673
Alignment:
Q  18 acagttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggattta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||| || ||||||||||||||||||||||||||    
T  52174478 acagttatggcatgttgattcttgaaatgattggaggaagaaagaactatgacactggagggtcatgtacttcagaaatgtactttccagactggattta 52174577  T
Q  118 taaggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtgagcctatg 213  Q
    |||||||||||||||||| |||  ||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  52174578 taaggatcttgagcaaggaaatactctttcaaattgtttgacaatctcagaggaagaaaatgatatggttataaagattactttggtgagtctatg 52174673  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 15063531 - 15063718
Alignment:
Q  18 acagttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggattta 117  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||| ||| | | ||| |||||   |||| | |||   |||||||| || ||||| |     
T  15063531 acagttatggcatgttgattcttgaaatgaccggaggaaaaaagaattatgacactggcgggtctcatacaaccgaagcatactttccggattggatatt 15063630  T
Q  118 taaggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtg 205  Q
    ||||||||||||||||||||||   |||||||||  |||| |||| ||||| ||||||||||||||| | || |||||||||||||||    
T  15063631 taaggatcttgagcaaggtaattcccttttaaatagtttggcaatctcagaagaagaaaatgatatgctaaagaagattactatggtg 15063718  T

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Target: scaffold0394 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 2003 - 1816
Alignment:
Q  18 acagttatggcatgttgattcttgaaatgattggaggaagaaagaactatcaaagtggagggtcgtgtacatctgaaatgtactttccagactggattta 117  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||| ||| | | ||| |||||   | || | ||||  |||||| | || ||||| |     
T  2003 acagttatggcatgttgattcttgaaatgaccggaggaaaaaagaattatgacactggcgggtctcttgcagccgaaacatacttttcggattggatatt 1904  T
Q  118 taaggatcttgagcaaggtaatgatcttttaaattctttgacaatttcagaggaagaaaatgatatggttaaaaagattactatggtg 205  Q
    ||||||||||||||||||||||  ||||||||||  | || |||| ||||| ||||||||||||||| | || |||||||||||||||    
T  1903 taaggatcttgagcaaggtaattctcttttaaatagtatggcaatctcagaagaagaaaatgatatgctaaagaagattactatggtg 1816  T

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