View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10230_low_5 (Length: 352)
Name: NF10230_low_5
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10230_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 4584901 - 4584577
Alignment:
| Q |
17 |
aagataactgctgcaatgacgttgcaaagatctcaaaatatgttatactacgtctgcattatggctgcggactgtgatttaaaatcataaatggtatata |
116 |
Q |
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| T |
4584901 |
aagataactgctgcaatgacgttgcaaagatctcaaaatatgttatactacgtctgcattatggctgcggactgtgatttaaaatcataagtggtatata |
4584802 |
T |
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| Q |
117 |
gctactttaattggaactagtttaatacgaaaacgcatcaacttcgtctgctacatctgtacattatggaatactaatattatcaatccagattgaatgc |
216 |
Q |
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| T |
4584801 |
gctactttaatcggaactagtttaatacgaaaacgcatcaacttcgtctgctacatctgtgcattatggaatactaatattatcaatccagattgaatgc |
4584702 |
T |
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| Q |
217 |
agtcactaagattgaatccagattgctaacattatggaatgttagatgaaatacggacagtttgtgttttgaattttgaaatcggatttacataaaactt |
316 |
Q |
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| T |
4584701 |
agtcactaagattgaatccagattgctgacattatggaatgttagatgaaatacggacagtttgtgttttgaattttgaaatcggatttacataaaactt |
4584602 |
T |
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| Q |
317 |
aaaattataaccatctgatcttcat |
341 |
Q |
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| T |
4584601 |
aaaattataaccatccgatcttcat |
4584577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 4592571 - 4592482
Alignment:
| Q |
131 |
aactagtttaatacgaaaacgcatcaacttcgtctgctacatctgtacattatggaatactaatattatcaatccagattgaatgcagtca |
221 |
Q |
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| T |
4592571 |
aactagtttaatataaaaacacatcaacttggtctgctacatctgtacattatggaatact-atactatcgatccagattgactgcagtca |
4592482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 4592467 - 4592410
Alignment:
| Q |
249 |
tatggaatgttagatgaaatacggacagtttgtgttttgaattttgaaatcggattta |
306 |
Q |
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|||||| ||||||| ||| |||| || ||||||||||| |||||||||||| |||||| |
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| T |
4592467 |
tatggattgttagaggaagtacgaacggtttgtgttttaaattttgaaatctgattta |
4592410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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