View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10230_low_7 (Length: 327)
Name: NF10230_low_7
Description: NF10230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10230_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 14150414 - 14150114
Alignment:
| Q |
17 |
ccttcttggtggctccaatggcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagagacaagcagccaataatgc |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14150414 |
ccttcttggtggctccaatagcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagaggcaagcagccaataatgc |
14150315 |
T |
|
| Q |
117 |
gtcctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtcccaatttctcagtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14150314 |
gtcctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtcccaacttctcagtc |
14150215 |
T |
|
| Q |
217 |
atagtatcaataatgaggagagggttactgggaccaccgacacgaacatgatggttattgacagattcgttagcaaaggttagcaactcggaggtttcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14150214 |
atagtatcaataatgaggagagggttactgggaccaccgacacgaacatgatggttattgacagattcgttagcaaaggttagcaactcggaggtttcat |
14150115 |
T |
|
| Q |
317 |
c |
317 |
Q |
| |
|
| |
|
|
| T |
14150114 |
c |
14150114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 13609946 - 13609735
Alignment:
| Q |
17 |
ccttcttggtggctccaatggcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagagacaagcagccaataatgc |
116 |
Q |
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||||||| ||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13609946 |
ccttctttgtggctccattggcaaccgagcaaatttcctttacagtgcgtggcttgtcttcttgtcgacaagcaatgtagaggcaagcagccaataatgc |
13609847 |
T |
|
| Q |
117 |
gtcctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtcccaatttctcagtc |
216 |
Q |
| |
|
||| || |||||| || ||||| ||||||||| | |||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| | |
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| T |
13609846 |
gtcttgatttcttcccctactagacttctgatcttgaacccgcttatatatctcattagctcggtccttaatgatcggaaccagtcccaacctctcagcc |
13609747 |
T |
|
| Q |
217 |
atagtatcaata |
228 |
Q |
| |
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|||||||||||| |
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|
| T |
13609746 |
atagtatcaata |
13609735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 14075003 - 14074792
Alignment:
| Q |
17 |
ccttcttggtggctccaatggcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagagacaagcagccaataatgc |
116 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
14075003 |
ccttcttggtggctccattggcaatcaaacaaatttcctttatagtgcgtggcttgtcttcttgtcgacaagcaatgtagacgcaagcagccaataatgc |
14074904 |
T |
|
| Q |
117 |
gtcctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtcccaatttctcagtc |
216 |
Q |
| |
|
||||| |||||| |||||||| ||||||||| | ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| | |
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|
| T |
14074903 |
ttcctgatttcttcccttactagacttctgatcttcaacccgcttatatatctcattagctcggtccttaatggtgggaaccagtcccaacttctcagcc |
14074804 |
T |
|
| Q |
217 |
atagtatcaata |
228 |
Q |
| |
|
||| |||||||| |
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|
| T |
14074803 |
ataatatcaata |
14074792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 13609604 - 13609517
Alignment:
| Q |
230 |
tgaggagagggttactgggaccaccgacacgaacatgatggttattgacagattcgttagcaaaggttagcaactcggaggtttcatc |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || |||||| | |||||||||||||||||| || | |||||||||||||| |
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|
| T |
13609604 |
tgaggagagggttattgggaccaccgacacgaacggcatcattattgccggattcgttagcaaaggttcgccattcggaggtttcatc |
13609517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 36012655 - 36012786
Alignment:
| Q |
53 |
cctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagagacaagcagccaataatgcgtcctggtttcttgccttactatacttctgatttgc |
152 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || | ||| ||||||||| | | |
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| T |
36012655 |
cctttacggtgcgtggcttgtcttcttgtcgacaagcaatgtagaggcaagcagccaataatgcgtcctgatttcttcccctgctagacttctgatcttc |
36012754 |
T |
|
| Q |
153 |
aaccagcttatatatctcaatagctcggtcct |
184 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| |
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| T |
36012755 |
aacccgcttatatatctcattagctcggtcct |
36012786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 36014354 - 36014439
Alignment:
| Q |
232 |
aggagagggttactgggaccaccgacacgaacatgatggttattgacagattcgttagcaaaggttagcaactcggaggtttcatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||| | |||||||| || |||||| || |||||||||||||||| |
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|
| T |
36014354 |
aggagagggttactgggaccaccgacacgaacgggatcgttatcaccggattcgttggcgaaggttcgccactcggaggtttcatc |
36014439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 22090900 - 22091012
Alignment:
| Q |
73 |
tcttcttgtcgacaagcaatgtagagacaagcagccaataatgcgtcctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaa |
172 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||| || || || || |||||| | ||||| |||| || | | ||||| ||||||||||||| |
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| T |
22090900 |
tcttcttgtcggcaagcgatgtagatacaagcagccaacaaagcatcttgatttcttcctctactagacttttggtcttcaaccctcttatatatctcat |
22090999 |
T |
|
| Q |
173 |
tagctcggtcctt |
185 |
Q |
| |
|
| ||||| ||||| |
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|
| T |
22091000 |
ttgctcgatcctt |
22091012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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