View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10231_low_1 (Length: 482)
Name: NF10231_low_1
Description: NF10231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10231_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Original strand, 49445483 - 49445933
Alignment:
| Q |
13 |
tggacatcaggtataatacaatcttcggtggcctattaataatgataaaataaaattaaacaaaccacaaaggcatcttaggaaataataaatcacatac |
112 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49445483 |
tggacatcaggtatcatacaatcttcggtggcctattaataatgataaaataaaattaaacaaaccacaaaggcatcttaggaaataataaatcacatac |
49445582 |
T |
|
| Q |
113 |
aatccctaaactaaacaaacctcactaaggtcaagtttttgaagctttgggcagtgacacaacacatgtactaacagcttccagttatagttgagagaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49445583 |
aatccctaaactaaacaaacctcactaaggtcaagtttttgaagctttgggcagtgacacaacacatgtactaacagcttccagttatagttgagagaga |
49445682 |
T |
|
| Q |
213 |
gaagcttcaagtgggccaaattatgaaagatgggaatcttttcatgagggcgatacatctaaacaacaatgtagaaagacaaacactcagaaataaggga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49445683 |
gaagcttcaagtgggccaaattatgaaagatgggaatctcgtcatgagggcgatacatctaaacaacaatgtagaaagacaaacactcagaaataaggga |
49445782 |
T |
|
| Q |
313 |
aaattatcaaaacaaggcataatcgaaaatacacaccaatcaggtttttcatctcctttcgattagtgtttttacttagcaacatattcatagtaaaatt |
412 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
49445783 |
aaattaccaaaacaaggcataatcgaaaatacacaccaatcaggtttttcatctcctttcgattagtgtttttccgtagcaacatattcatagtaaaatt |
49445882 |
T |
|
| Q |
413 |
caaacctcgtctatttgtatgcagagaaactccacattacagagtgccttc |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49445883 |
caaacctcgtctatttgtatgcagagaaactccacattacagagtgccttc |
49445933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 49415894 - 49415800
Alignment:
| Q |
62 |
ataaaattaaacaaaccacaaaggcatcttaggaaataataaatcacatacaatccctaaactaaacaaacctcactaaggtcaagtttttgaag |
156 |
Q |
| |
|
||||||| ||| ||| ||||||||||| ||| ||||| |||||||| ||| | ||||||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
49415894 |
ataaaataaaataaatcacaaaggcatgttaagaaatgataaatcagatatgacccctaaacttaacaaacctcactaagctcaacattttgaag |
49415800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University