View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10231_low_4 (Length: 355)
Name: NF10231_low_4
Description: NF10231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10231_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 4158484 - 4158812
Alignment:
| Q |
11 |
cagagaggagggaaaaagcagttttgctttttagtttttatggcttttacccaagatatgttaaaagttatttcataatcagcccctcatcatctctcat |
110 |
Q |
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| T |
4158484 |
cagagaggagggaaaaagcagttttgctttttagtttttatggcttttacccaagatatgttaaaagttatttcataatcagcccctcatcatctctcat |
4158583 |
T |
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| Q |
111 |
ggaccataccataatattataactttatctctactttttatggaggagaatgtttgcttcaataatcaatcaatatgccagatattttactatttaacaa |
210 |
Q |
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| T |
4158584 |
ggaccataccataatattataactttatctctactttttatggaggagaatgtttgcttcaataatcaatcaatatgccagatattttactatttaacaa |
4158683 |
T |
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| Q |
211 |
tattgctttattatccttcnnnnnnncaatattgatttattatatcctct-nnnnnnntatattgattaattattatataataaagttataataacgttt |
309 |
Q |
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| T |
4158684 |
tattgctttattatccttcaaaaaaacaatattcatttattatatcctataaaaaaaatatattgat---ttattatataataaagttataataacgttt |
4158780 |
T |
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| Q |
310 |
taaagtgagatacatgcatatcataatgctat |
341 |
Q |
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|||| ||||| ||||||||||||||||||||| |
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| T |
4158781 |
taaactgagacacatgcatatcataatgctat |
4158812 |
T |
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