View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10231_low_5 (Length: 324)

Name: NF10231_low_5
Description: NF10231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10231_low_5
NF10231_low_5
[»] chr8 (4 HSPs)
chr8 (12-186)||(32639135-32639309)
chr8 (181-286)||(32638978-32639083)
chr8 (279-322)||(32638143-32638186)
chr8 (73-130)||(11567810-11567867)
[»] chr1 (4 HSPs)
chr1 (80-183)||(5086028-5086131)
chr1 (65-135)||(29086792-29086862)
chr1 (222-252)||(31135649-31135679)
chr1 (65-134)||(49191663-49191732)
[»] chr4 (3 HSPs)
chr4 (80-164)||(42784773-42784857)
chr4 (96-181)||(14013842-14013927)
chr4 (64-164)||(49984439-49984538)
[»] chr6 (1 HSPs)
chr6 (64-183)||(34428059-34428178)
[»] chr3 (1 HSPs)
chr3 (65-148)||(53798248-53798330)
[»] chr2 (4 HSPs)
chr2 (72-162)||(33643546-33643636)
chr2 (75-134)||(33719047-33719106)
chr2 (216-253)||(32710266-32710303)
chr2 (204-253)||(33459226-33459275)
[»] chr5 (2 HSPs)
chr5 (94-183)||(32810900-32810989)
chr5 (222-254)||(35138552-35138584)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 32639309 - 32639135
Alignment:
Q  12 agcatagggatcagctggtagatgacagtgattttgaaggagagaatgttcggcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32639309 agcatagggatcagctggtagatgacagtgattttgaaggagagaatgttcggcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaa 32639210  T
Q  112 atttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaatatctttt 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32639209 atttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaatatctttt 32639135  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 32639083 - 32638978
Alignment:
Q  181 tcttttgctgcatcgtgacaaatggactagattaattgatgttgttcaatttaaaggactaaattgctatttcgataaatttaagaaaagtgtactaact 280  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||  ||||    
T  32639083 tcttttgctgcatcgtgacaaatggactagattgattgatgttgatcaatttaaaggactaaattgctattttcataaatttaagaaaagtgtatcaact 32638984  T
Q  281 gaaacc 286  Q
    ||||||    
T  32638983 gaaacc 32638978  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 32638186 - 32638143
Alignment:
Q  279 ctgaaacctgactttcagatttggagggatcggatatgcctttg 322  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||    
T  32638186 ctgaaacctgactttcagatttggagggatttgatatccctttg 32638143  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 11567867 - 11567810
Alignment:
Q  73 tcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaatt 130  Q
    ||||| ||| ||||||||| | ||||||||||  |||||||||||||||||| |||||    
T  11567867 tcctcggaaatgtaatggttgggcaatttagtccctcaaatttacgaaatagcaaatt 11567810  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 5086131 - 5086028
Alignment:
Q  80 aattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaat 179  Q
    ||||||||| ||| || ||||||||  ||||||||||| |||||| |||||||||| ||||| |||||||  || ||||||||||  | || ||||||||    
T  5086131 aattgtaattgtcaagaaatttagtccctcaaatttacaaaatagcaaattagtcctttaaattaaagaatatcaatcaatttagttattcaatcaaaat 5086032  T
Q  180 atct 183  Q
    ||||    
T  5086031 atct 5086028  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 29086862 - 29086792
Alignment:
Q  65 catttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtcc 135  Q
    |||| ||||||||| |||||||||| ||||||||||||||  ||  ||||||| |||||| ||| ||||||    
T  29086862 cattccggtcctcaaaattgtaatgatcgagcaatttagtcccttcaatttacaaaatagaaaactagtcc 29086792  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 31135649 - 31135679
Alignment:
Q  222 ttgttcaatttaaaggactaaattgctattt 252  Q
    |||||||||||||||||||||||||||||||    
T  31135649 ttgttcaatttaaaggactaaattgctattt 31135679  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 49191663 - 49191732
Alignment:
Q  65 catttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtc 134  Q
    ||||||||| |||| ||||||||| | ||||||||| |||  || ||||||||||||||| ||| |||||    
T  49191663 catttcggttctcaaaattgtaatagccgagcaattcagtccctaaaatttacgaaataggaaaatagtc 49191732  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 42784773 - 42784857
Alignment:
Q  80 aattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttag 164  Q
    |||||| |||||||| |||||||||| || ||||||||||||||| |||||||||| | ||  ||||||| ||| || |||||||    
T  42784773 aattgtgatggtcgatcaatttagttcctgaaatttacgaaatagcaaattagtccctcaagttaaagaaattcaattaatttag 42784857  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 14013842 - 14013927
Alignment:
Q  96 caatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaatat 181  Q
    |||||||||  |||||||||| ||||||| ||| || ||| ||||| ||||||||  | |||||||||| | ||||||||||||||    
T  14013842 caatttagtccctcaaatttatgaaatagcaaaataatcccttaaattaaagaacaccaatcaatttagtccctctatcaaaatat 14013927  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 49984538 - 49984439
Alignment:
Q  64 gcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaattta 163  Q
    ||||||| ||||||| ||||  |||||||||  |||| ||  ||||||||||||||||  ||||||| |||| || || |||||||| || |||||||||    
T  49984538 gcatttcagtcctcaaaattagaatggtcgactaattcagagtctcaaatttacgaaactgtaaattggtcc-tttaattaaagaacatcaatcaattta 49984440  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 34428059 - 34428178
Alignment:
Q  64 gcatttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaattta 163  Q
    |||||| |||||||| |||||| | |||||  ||||||| |  |||||||||| || |||| |||||| ||| ||||| |||||| | || |||||||||    
T  34428059 gcattttggtcctcaaaattgtgaaggtcggtcaatttaatccctcaaatttatgatatagcaaattaatcctttaaattaaagagcctcaatcaattta 34428158  T
Q  164 gccactctatcaaaatatct 183  Q
    | | ||| ||||||||||||    
T  34428159 gtccctccatcaaaatatct 34428178  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 53798248 - 53798330
Alignment:
Q  65 catttcggtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaaga 148  Q
    ||||||| |||||  ||||||||||||||  ||||||||| || | |||||||||||||| |||||||||| ||||| ||||||    
T  53798248 catttcgatcctcgaaattgtaatggtcggtcaatttagtctc-ctaatttacgaaataggaaattagtcctttaaattaaaga 53798330  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 33643546 - 33643636
Alignment:
Q  72 gtcctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaattt 162  Q
    ||||||| |||||||| | |||||||||||| |  ||||| |||||||||||| ||| |||||| | ||| |||||||| || ||||||||    
T  33643546 gtcctcaaaattgtaaggctcgagcaatttactcgctcaagtttacgaaatagcaaagtagtccctcaaattaaagaacgtcaatcaattt 33643636  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 33719106 - 33719047
Alignment:
Q  75 ctcagaattgtaatggtcgagcaatttagtttctcaaatttacgaaatagtaaattagtc 134  Q
    |||| |||||||| ||||||||||||||||  ||||||| |||||||||| ||| |||||    
T  33719106 ctcaaaattgtaagggtcgagcaatttagtcactcaaatatacgaaatagcaaactagtc 33719047  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 32710303 - 32710266
Alignment:
Q  216 ttgatgttgttcaatttaaaggactaaattgctatttc 253  Q
    ||||| || |||||||||||||||||||||||||||||    
T  32710303 ttgatatttttcaatttaaaggactaaattgctatttc 32710266  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 33459275 - 33459226
Alignment:
Q  204 ggactagattaattgatgttgttcaatttaaaggactaaattgctatttc 253  Q
    |||||| |||||||||| || |||||||||| ||||| ||||||||||||    
T  33459275 ggactaaattaattgatatttttcaatttaagggactgaattgctatttc 33459226  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 32810900 - 32810989
Alignment:
Q  94 agcaatttagtttctcaaatttacgaaatagtaaattagtccgttaaactaaagaacttccatcaatttagccactctatcaaaatatct 183  Q
    |||||||||||  |||||||||||||||||| ||||||| |  | |||  ||||||| || ||||||||||   ||| ||||||||||||    
T  32810900 agcaatttagtccctcaaatttacgaaatagcaaattaggctctgaaataaaagaacgtcaatcaatttagttcctcaatcaaaatatct 32810989  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 35138552 - 35138584
Alignment:
Q  222 ttgttcaatttaaaggactaaattgctatttcg 254  Q
    ||||||||||||| |||||||||||||||||||    
T  35138552 ttgttcaatttaagggactaaattgctatttcg 35138584  T

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