View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10231_low_7 (Length: 238)

Name: NF10231_low_7
Description: NF10231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10231_low_7
NF10231_low_7
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-223)||(448253-448475)
[»] chr7 (3 HSPs)
chr7 (14-131)||(31207017-31207137)
chr7 (14-130)||(31210408-31210527)
chr7 (92-131)||(13815404-13815444)
[»] chr1 (1 HSPs)
chr1 (14-130)||(4242947-4243066)
[»] chr2 (3 HSPs)
chr2 (14-131)||(32424597-32424717)
chr2 (15-130)||(27106930-27107047)
chr2 (43-130)||(30750134-30750221)
[»] scaffold0028 (2 HSPs)
scaffold0028 (15-130)||(109748-109865)
scaffold0028 (15-131)||(127329-127447)
[»] chr4 (3 HSPs)
chr4 (14-125)||(44643064-44643178)
chr4 (14-130)||(4746799-4746918)
chr4 (91-130)||(895095-895135)
[»] chr6 (5 HSPs)
chr6 (48-130)||(34233387-34233470)
chr6 (46-131)||(34235083-34235169)
chr6 (45-132)||(28745821-28745909)
chr6 (92-132)||(24045342-24045383)
chr6 (92-131)||(24042027-24042067)
[»] chr5 (1 HSPs)
chr5 (54-109)||(14837621-14837676)
[»] chr3 (1 HSPs)
chr3 (91-131)||(16366789-16366830)


Alignment Details
Target: scaffold0002 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 448475 - 448253
Alignment:
Q  1 taaggctaatttcccaacccacatttacaactttctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  448475 taaggctaatttcccaacccacatttacaactttctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttttaattaacttt 448376  T
Q  101 tgaaataaatagaactctaaaattacaacaaagaagatataagcagtgcaaaagcaaactgataaacctttacaatatgtatattgattttatgagctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  448375 tgaaataaatagaactctaaaattacaacaaagaagatataagcagtgcaaaagcaaactgataaacctttacaatatgtatattgattttatgagctaa 448276  T
Q  201 aaatgtgcaatgcaagagattgc 223  Q
    |||||||||||||||||||||||    
T  448275 aaatgtgcaatgcaagagattgc 448253  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 31207017 - 31207137
Alignment:
Q  14 ccaacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaat 110  Q
    |||||||||||||||||||||  |||| || |||||||||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  31207017 ccaacccacatttacaactttgactaagtatatcaacatgtggtcaaaataattgtttagtaaaataaaacatatttctaattaacttttgaaataaaat 31207116  T
Q  111 agaactctaaaattacaacaa 131  Q
    | ||||||||||||| |||||    
T  31207117 aaaactctaaaattataacaa 31207137  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 31210408 - 31210527
Alignment:
Q  14 ccaacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaat 110  Q
    |||||||||||||||||||||  |||| || |||||||| || |||||||||  ||||| ||||||||| ||||||| ||||||||||||||||| ||||    
T  31210408 ccaacccacatttacaactttgactaagtatatcaacatatgatcaaaataattgtttaataaaataaaacatatttttaattaacttttgaaataaaat 31210507  T
Q  111 agaactctaaaattacaaca 130  Q
    | ||||||||||||| ||||    
T  31210508 aaaactctaaaattataaca 31210527  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 13815444 - 13815404
Alignment:
Q  92 attaacttttgaaataaa-tagaactctaaaattacaacaa 131  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  13815444 attaacttttgaaataaaataaaactctaaaattacaacaa 13815404  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 4242947 - 4243066
Alignment:
Q  14 ccaacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaat 110  Q
    |||||||||||||||||||||  |||| || ||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||| ||||    
T  4242947 ccaacccacatttacaactttgactaagtatatcaacatgtggtcaaaataataatttagtaaaataaaacatatttctaattaacttttgaaataaaat 4243046  T
Q  111 agaactctaaaattacaaca 130  Q
    | |||| |||||||||||||    
T  4243047 aaaactttaaaattacaaca 4243066  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 32424717 - 32424597
Alignment:
Q  14 ccaacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaat 110  Q
    ||||| |||||||||||||||  |||| || ||||||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||| |||| ||||    
T  32424717 ccaactcacatttacaactttgactaagtatatcaacatgcggtcaaaataatagtttagtaaaataaaacatatttctaattaacttttaaaataaaat 32424618  T
Q  111 agaactctaaaattacaacaa 131  Q
    | |||||||||||||||||||    
T  32424617 aaaactctaaaattacaacaa 32424597  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 27107047 - 27106930
Alignment:
Q  15 caacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaata 111  Q
    ||||||||||||| ||||||  |||| || ||||||||||||||||||||| |||||| ||||||||| ||||||| |||||||||||| |||| |||||    
T  27107047 caacccacatttataactttgactaagtatatcaacatgtggtcaaaataatagtttagtaaaataaaacatatttttaattaacttttaaaataaaata 27106948  T
Q  112 gaactctaaaattacaaca 130  Q
     ||||| ||||||||||||    
T  27106947 aaactc-aaaattacaaca 27106930  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 30750134 - 30750221
Alignment:
Q  43 atcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaatagaactctaaaattacaaca 130  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||| |    |||||||||||| ||||| ||||||||||||||||||    
T  30750134 atcaacgtgtggtcaaaataatagtttagtaaaataaagcatattt-tctggaacttttgaaataaaataaaactctaaaattacaaca 30750221  T

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Target: scaffold0028 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 109865 - 109748
Alignment:
Q  15 caacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaata 111  Q
    ||||||||||||| ||||||  |||| || ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  109865 caacccacatttataactttgactaagtatatcaacatgtggtcaaaataatagtttagtaaaataaaacatatttctaattaacttttgaaataaaata 109766  T
Q  112 gaactctaaaattacaaca 130  Q
     ||||| ||||||||||||    
T  109765 aaactc-aaaattacaaca 109748  T

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Target: scaffold0028; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 127447 - 127329
Alignment:
Q  15 caacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaata 111  Q
    ||||||||||||| ||||||  ||||  | ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||||    
T  127447 caacccacatttataactttgactaagaatatcaacatgtggtcaaaataatagtttagtaaaataaaacatatttctaattaacttttgaaataaaata 127348  T
Q  112 gaactctaaaattacaacaa 131  Q
     ||||| |||||||||||||    
T  127347 aaactc-aaaattacaacaa 127329  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 44643178 - 44643064
Alignment:
Q  14 ccaacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaat 110  Q
    |||||||||||||||||||||  |||| || ||||||||||||| ||||||| |||||| ||||||||| ||||||| ||||||||||||||||| ||||    
T  44643178 ccaacccacatttacaactttgactaagtatatcaacatgtggttaaaataatagtttagtaaaataaaacatatttttaattaacttttgaaataaaat 44643079  T
Q  111 agaactctaaaatta 125  Q
    | |||||||||||||    
T  44643078 aaaactctaaaatta 44643064  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 4746918 - 4746799
Alignment:
Q  14 ccaacccacatttacaacttt--ctaaataaatcaacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaat 110  Q
    |||||||| ||||||||||||  |||| || ||||||||||||||||||||| |||||| |||| | || ||| ||||||||||||||||||||| ||||    
T  4746918 ccaacccatatttacaactttgactaagtatatcaacatgtggtcaaaataatagtttagtaaagttaatcatgtttctaattaacttttgaaataaaat 4746819  T
Q  111 agaactctaaaattacaaca 130  Q
    | ||||||||||||||||||    
T  4746818 aaaactctaaaattacaaca 4746799  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 895135 - 895095
Alignment:
Q  91 aattaacttttgaaataaa-tagaactctaaaattacaaca 130  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  895135 aattaacttttgaaataaaataaaactctaaaattacaaca 895095  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 34233470 - 34233387
Alignment:
Q  48 catgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaatagaactctaaaattacaaca 130  Q
    |||||||||||||||| |||| | ||||||||||| ||||| ||||||||||||||||| ||||| |||| |||||||||||||    
T  34233470 catgtggtcaaaataatagttaagtaaaataaagcttatttttaattaacttttgaaataaaataaaactttaaaattacaaca 34233387  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 34235169 - 34235083
Alignment:
Q  46 aacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaataa-atagaactctaaaattacaacaa 131  Q
    |||||||||||||||||| |||| | ||||||||||| ||||| |||||||||| |||||||| ||| |||| ||||||||||||||    
T  34235169 aacatgtggtcaaaataatagttaaataaaataaagcttatttttaattaacttctgaaataatataaaactttaaaattacaacaa 34235083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 28745909 - 28745821
Alignment:
Q  45 caacatgtggtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaat-aaatagaactctaaaattacaacaaa 132  Q
    |||||| ||||||||| || |||  | |||||||| || |||||  |||||||||||||||| ||||| |||| |||||||||||||||    
T  28745909 caacatatggtcaaaacaatagtggagtaaaataaggcttatttgcaattaacttttgaaataaaatacaactttaaaattacaacaaa 28745821  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 24045342 - 24045383
Alignment:
Q  92 attaacttttgaaataaa-tagaactctaaaattacaacaaa 132  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  24045342 attaacttttgaaataaaataaaactctaaaattacaacaaa 24045383  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 24042027 - 24042067
Alignment:
Q  92 attaacttttgaaataaa-tagaactctaaaattacaacaa 131  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  24042027 attaacttttgaaataaaataaaactctaaaattacaacaa 24042067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 14837621 - 14837676
Alignment:
Q  54 gtcaaaataacagtttattaaaataaagcatatttctaattaacttttgaaataaa 109  Q
    |||||||||| |||||  ||||||||  | ||||||||||||||||||||||||||    
T  14837621 gtcaaaataatagttttgtaaaataattcttatttctaattaacttttgaaataaa 14837676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 16366789 - 16366830
Alignment:
Q  91 aattaacttttgaaataaa-tagaactctaaaattacaacaa 131  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  16366789 aattaacttttgaaataaaataaaactctaaaattacaacaa 16366830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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