View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10232_low_2 (Length: 374)
Name: NF10232_low_2
Description: NF10232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10232_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 160 - 355
Target Start/End: Complemental strand, 43799327 - 43799132
Alignment:
| Q |
160 |
acaatttcaatctcttacttttgagtttcttgaccttcacatcagaacacttggggcaaatccacggaccaatcggaactcgaacaacaattggtctgac |
259 |
Q |
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| T |
43799327 |
acaatttcaatctcttacttttgagtttcttgaccttcacatcagaacacttggggcaaatccacggaccaatcggaactcgaacaacaattggtctgac |
43799228 |
T |
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| Q |
260 |
acatttcatatgaaaaccattgtcacatttgtcacacaaaagcagctcctccggttgttcaccggacccacattgctcacacaggaggtcaccgta |
355 |
Q |
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| T |
43799227 |
acatttcatatgaaaaccattgtcacatttgtcacacaaaagcagctcctccggttgttcaccggacccacattgctcacacaggaggtcaccgta |
43799132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43799480 - 43799406
Alignment:
| Q |
1 |
tgttcccgaaaagagaatccctacgaagcccgaagaaatcaagaattttcttctgagaaagctctgtaacacatt |
75 |
Q |
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| T |
43799480 |
tgttcccgaaaagagaatccctacgaagcccgaagaaatcaagaattttcttctgagaaagctctgtaacacatt |
43799406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 205 - 342
Target Start/End: Complemental strand, 43794457 - 43794320
Alignment:
| Q |
205 |
aacacttggggcaaatccacggaccaatcggaactcgaacaacaattggtctgacacatttcatatgaaaaccattgtcacatttgtcacacaaaagcag |
304 |
Q |
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| T |
43794457 |
aacacttggggcaaatccatgaaccaataggaactctagccagaatcggtctcagacacttcatatgaaaacctttgtcgcatttgtcacacaacaaaag |
43794358 |
T |
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| Q |
305 |
ctcctccggttgttcaccggacccacattgctcacaca |
342 |
Q |
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| T |
43794357 |
ctcctcaggttgttcaccagatccacatcgctcacaca |
43794320 |
T |
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