View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10232_low_3 (Length: 287)
Name: NF10232_low_3
Description: NF10232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10232_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 46847371 - 46847652
Alignment:
| Q |
1 |
tcaccatcaatctctatagaggtgcaaccgggaactttcttcattcctttgtcatttaaccttgttcttatccttgctacatcgtcccatctaccagctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46847371 |
tcaccatcaatctctatagaggtgcaaccgggaactttcttcattcctttgtcatttaaccttgttcttatccttgctacatcgtcccatctaccagctc |
46847470 |
T |
|
| Q |
101 |
ctgcatatatatttgacagaagcacaaatgcccctgcattttctggctctaattgaaagaggcgttctgctacatattcaccgaactcaacgcgtccatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46847471 |
ctgcatatatatttgacagaagcacaaatgcccctgcattttctggctctaattgaaagaggcgttctgctacatattcaccgaactcaacgcgtccatg |
46847570 |
T |
|
| Q |
201 |
aaccttacaagcactaagaagagaaccccaaatagctccatccggctccatttccatatttttcataagaatctctgcttct |
282 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46847571 |
agccttacaagcactaagaagagaaccccaaatagctccatccggctccatttccatatttttcataagaatctctgcttct |
46847652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University