View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10232_low_5 (Length: 254)
Name: NF10232_low_5
Description: NF10232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10232_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 39241833 - 39241611
Alignment:
| Q |
18 |
atatcttcaaaccatctcccaagtccacatcaacctgaacattgatttgagaggaaagctgatgaattgcatcatggtttgcaactcgaagtaatgccat |
117 |
Q |
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| T |
39241833 |
atatcttcaaaccatctcccaagtccacatcaacctgaaaattgatttgagaggaaagccgatgaattgcatcatgggttgcaactcgaagtaatgccat |
39241734 |
T |
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| Q |
118 |
cgatttaatttctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39241733 |
cgatttaatttctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggta |
39241634 |
T |
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| Q |
218 |
cttcctgccacagcttttatctc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
39241633 |
cttcctgccacagcttttatctc |
39241611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 808185 - 807964
Alignment:
| Q |
18 |
atatcttcaaaccatctcccaagtccacatcaacctgaacattgatttgagaggaaagctgatgaattgcatcatggtttgcaactcgaagtaatgccat |
117 |
Q |
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| T |
808185 |
atatcttcaaactatttcccaaatctacatcaacctgaacactgctttgggtggaaagctgatgaattgcatcctgggttgcaactcgaagcaatgccat |
808086 |
T |
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| Q |
118 |
cgatttaatttctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggta |
217 |
Q |
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| T |
808085 |
tgacttaatttcttcaaccccgtgacgcttgaatatattttcagaatctggtaagagatggcgcatcatattctgaagcaaatcttctccaccgatggta |
807986 |
T |
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| Q |
218 |
cttcctgccacagcttttatct |
239 |
Q |
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| T |
807985 |
cttcctgccaaggcttttatct |
807964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 47842917 - 47842826
Alignment:
| Q |
143 |
ttcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttt |
234 |
Q |
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| T |
47842917 |
ttcttgaatatattttcagaatctggtaagagataacgtatcatattcacaagcaagtcttctccaccactagaacttcctgccaaagcttt |
47842826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 42927003 - 42927097
Alignment:
| Q |
143 |
ttcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttttat |
237 |
Q |
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| T |
42927003 |
ttcttgaatatatttttagaatcaggtaagagatgacaaatcatattttcaagcaaatcttctctaccaataggacttcctgtcagggcttttat |
42927097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 44728001 - 44728094
Alignment:
| Q |
144 |
tcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctccaccgatggtacttcctgccacagcttttat |
237 |
Q |
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|||||||||| ||||| |||| || |||||||||||||||||||| |||||| || |||||||| || | ||||||||||| |||||||| |
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| T |
44728001 |
tcttgaatatattttcgtaatcgggaaagagatgacacatcatatttccaagcaaatcttctccaccaatagcacttcctgccaacgcttttat |
44728094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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