View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_high_17 (Length: 394)
Name: NF10233A_high_17
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 388
Target Start/End: Complemental strand, 7440845 - 7440462
Alignment:
| Q |
9 |
ggtgttacaaacaatatatatagtattactgctatgattcagttaacaatattacctctgatgagccataatacaaccggcccttgccttctttaatgtt |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||| |
|
|
| T |
7440845 |
ggtgttacaaacaatatatataatattactactatgattcagttaacaatattacctctgatgagccatactactaccgccccttgccttatttaatgtc |
7440746 |
T |
|
| Q |
109 |
ttgcatatattaggtatactttaacaacttagaaatcaaaattaaagataatttataacgcttgatttcctcaattcactctagccatt----taacaaa |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7440745 |
ttgcatatattaggtaaactttaacaacttagaaatcaaaattaaagataatttataacacttgatttcctcaattcactctagccattaatttaacaaa |
7440646 |
T |
|
| Q |
205 |
gaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaacatgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7440645 |
gaagaaaattgtgatgacttataaaggagtcaaagcaatcaatacctaaacatgttttaaatcaaacttgatatcaaaacattggtgctagaaggaggat |
7440546 |
T |
|
| Q |
305 |
tgagggcaaatgaaccttctaacacctaaatatctttgattgtggggtacgattccattacaaaagaaagtctaacagtcttag |
388 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7440545 |
tgagggcaaatgaaccttttagcacctaaatatctttgattgtggggtacgattccattacaaaagaaagtataacagtcttag |
7440462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 6397803 - 6397845
Alignment:
| Q |
10 |
gtgttacaaacaatatatatagtattactgctatgattcagtt |
52 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||||||| |
|
|
| T |
6397803 |
gtgttacaagcaatatatatagtattattactatgattcagtt |
6397845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 36010253 - 36010202
Alignment:
| Q |
11 |
tgttacaaacaatatatatagtattactgctatgattcagttaacaatatta |
62 |
Q |
| |
|
|||||||||||||||||||| || |||| ||| ||||||||| ||||||||| |
|
|
| T |
36010253 |
tgttacaaacaatatatataatactacttctacgattcagttcacaatatta |
36010202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University