View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_high_20 (Length: 374)
Name: NF10233A_high_20
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_high_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 47117128 - 47116776
Alignment:
| Q |
18 |
gacatcatcaccggcgaagatggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaa |
117 |
Q |
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| T |
47117128 |
gacatcatcaccggtgaagacggtgatgttggcgttcccgttgagctttgttgcctatcatacattctccgcctatccatctacaaaacaagaaattaaa |
47117029 |
T |
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| Q |
118 |
aataatcgttaaaaggtgatcgatcgagtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctcctt |
217 |
Q |
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| T |
47117028 |
aataatcgttaaaaggtgatcga----gtcattgatacgttgatattgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctcctt |
47116933 |
T |
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| Q |
218 |
gaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtca |
317 |
Q |
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| T |
47116932 |
gaattgaaactaaagatataaaagaaattggttattgaatatctttgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtca |
47116833 |
T |
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| Q |
318 |
gnnnnnnngagatatcataaggaaatgaaataacaagggtatgaggaagcttggagt |
374 |
Q |
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| T |
47116832 |
gaaaaaaagagatatcataaggaaatgaaataacaagggtatgaggaagcttggagt |
47116776 |
T |
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