View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_high_23 (Length: 356)

Name: NF10233A_high_23
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_high_23
NF10233A_high_23
[»] chr2 (4 HSPs)
chr2 (6-356)||(20658716-20659066)
chr2 (61-249)||(44883877-44884065)
chr2 (235-339)||(25102129-25102233)
chr2 (268-313)||(21087478-21087523)
[»] chr3 (13 HSPs)
chr3 (61-284)||(16746958-16747181)
chr3 (223-339)||(8563506-8563622)
chr3 (61-336)||(6008387-6008662)
chr3 (61-339)||(31932826-31933104)
chr3 (65-339)||(49640111-49640385)
chr3 (235-335)||(17784328-17784428)
chr3 (235-335)||(19085847-19085947)
chr3 (235-335)||(19092955-19093055)
chr3 (61-339)||(31663292-31663570)
chr3 (207-339)||(31952160-31952292)
chr3 (68-153)||(36788348-36788433)
chr3 (55-171)||(17784492-17784608)
chr3 (55-171)||(19086011-19086127)
[»] chr7 (4 HSPs)
chr7 (61-339)||(17244831-17245109)
chr7 (61-199)||(8864588-8864726)
chr7 (212-339)||(41598540-41598667)
chr7 (290-339)||(4646668-4646717)
[»] chr6 (1 HSPs)
chr6 (61-339)||(26905024-26905302)
[»] chr8 (3 HSPs)
chr8 (61-339)||(29338246-29338524)
chr8 (73-284)||(22186428-22186639)
chr8 (61-336)||(14503234-14503509)
[»] scaffold0252 (1 HSPs)
scaffold0252 (223-339)||(5412-5528)
[»] chr4 (2 HSPs)
chr4 (61-336)||(30856875-30857150)
chr4 (61-171)||(55225289-55225399)
[»] chr5 (2 HSPs)
chr5 (61-336)||(22289889-22290164)
chr5 (235-354)||(28244146-28244265)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 356
Target Start/End: Complemental strand, 20659066 - 20658716
Alignment:
Q  6 tccaacgatcatggaaacccattttagacatcactacacgaagatactcctagtacatacgatcatatgctttactaatatcgagtttcaaagcaacgta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20659066 tccaacgatcatggaaacccattttagacatcactacacgaagatgctcctagtacatacgatcatatgctttgctaatatcgagtttcaaagcaacgta 20658967  T
Q  106 cttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctaccataacattatccaatatggatcttcccagaacaaaagcaaattga 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  20658966 cttgtcttctccccgtatcttagtctgcataaaatgtagaaactcaatcgctaccataacattatccaatatggatcttcctagaacaaaagcagattga 20658867  T
Q  206 ctgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20658866 ctgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaat 20658767  T
Q  306 ccttcatgctaacctgcgaggaaccttttggaattaacgcaatattagtga 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20658766 ccttcatgctaacctgcgaggaaccttttggaattaacgcaatattagtga 20658716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 249
Target Start/End: Complemental strand, 44884065 - 44883877
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| ||||| ||||| || ||||||| |||||| ||| ||||||| || || ||||| || | ||||||||| | ||  || || || |||    
T  44884065 catacgatcataggctttgctaatgtcaagtttcagagcaacatacctgtcttcgcctcgcgtcttggttttcataaaatgcaaaacttcgattgcgacc 44883966  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgc 249  Q
    ||| ||||||| |  || ||||| ||| ||||||||||  ||||  | |||||||| |||||||||||||| | |||||||||||||||    
T  44883965 atagcattatctaggatagatctccccggaacaaaagcggattggttatctgagatgcattgagacaaaactttcttcaacctgtttgc 44883877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 339
Target Start/End: Complemental strand, 25102233 - 25102129
Alignment:
Q  235 cttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaacctttt 334  Q
    ||||||||||||||||||||| ||  | || ||||| ||||| ||||| |  || ||||| | | ||||||| ||||||||||||||||  ||||||||     
T  25102233 cttcaacctgtttgctaacactttggatataattttatataacacattgcataatgctattggctgccaatctttcatgctaacctgcgtagaaccttta 25102134  T
Q  335 ggaat 339  Q
    |||||    
T  25102133 ggaat 25102129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 21087478 - 21087523
Alignment:
Q  268 tttgtataaaacattacgcaacgctatagaccgccaatccttcatg 313  Q
    ||||||||||||||||| |||||||||||  | |||||||||||||    
T  21087478 tttgtataaaacattacacaacgctataggtctccaatccttcatg 21087523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 16746958 - 16747181
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| |||||||||||||||||||| |||||||| |||||||| |  || ||||| || || | |||||| ||||  | |||||| || |||    
T  16746958 catacgatcataagctttactaatatcgagttttaaagcaacatacttgtccttaccacgtgttttggttttcataaagtgtaacatctcaatggcaacc 16747057  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    ||| | || || || || || |||||| |||| |||||| ||||| |||| || |||||||||||||| ||   ||||||||||||||||||||||||      
T  16747058 atagcgttgtctaagattgaccttcccggaacgaaagcagattgattgtcggaaatacattgagacaagaccaccttcaacctgtttgctaacaccttcg 16747157  T
Q  261 aaatgattttgtataaaacattac 284  Q
    |||| ||||| || | ||||||||    
T  16747158 aaataattttataaagaacattac 16747181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 339
Target Start/End: Complemental strand, 8563622 - 8563506
Alignment:
Q  223 agacaaaacatgcttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgc 322  Q
    |||||| |||||||||||||||||||||||||| ||  |||| ||||| ||||||||||| |  |  ||||| | |||||||||||||||||||||||||    
T  8563622 agacaacacatgcttcaacctgtttgctaacactttagaaataattttatataaaacattgcaaagtgctattggccgccaatccttcatgctaacctgc 8563523  T
Q  323 gaggaaccttttggaat 339  Q
    || |||||||| |||||    
T  8563522 gaagaacctttaggaat 8563506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 336
Target Start/End: Original strand, 6008387 - 6008662
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| ||||| |||||||| ||||| | || ||| ||| ||||||| || || ||||| |  | ||||||||||| || |||||| ||||||    
T  6008387 catacgatcataggctttgctaatatcaagttttagagaaacatacctgtcttcccctcgcgtcttggctttcataaaatgtaaaacctcaattgctacc 6008486  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    ||| ||||||| || || || | | |  | || || |   ||||| |||| || || |||| || ||  || | |||||||| |||||||||||| ||      
T  6008487 atagcattatctaaaatcgagcgttctgggacgaaggtggattgattgtcggaaatgcatttaggcagcactttcttcaaccggtttgctaacactttcg 6008586  T
Q  261 aaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttgg 336  Q
    |||||||||||||||| |||||||  |  |||||||  |||||||||||||||||||||||||  |||||||||||    
T  6008587 aaatgattttgtataacacattacaaagtgctatagggcgccaatccttcatgctaacctgcgtagaaccttttgg 6008662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 339
Target Start/End: Complemental strand, 31933104 - 31932826
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||||||||| ||||| || ||||| | |||||| ||| | ||||| || |||||||| |  | ||| |||||||  |  ||||| ||||||    
T  31933104 catacgatcatatgctttgctaatgtcaagtttgagagcaacatacatatcttccccgcgtgtcttggctttcatgaaatgtatgacttcaattgctacc 31933005  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    || |||||||| |  ||||| |  ||  ||||||| ||  | ||  |||| |||||||| |||| ||| |||| ||||||||||||||||||||| ||      
T  31933004 atgacattatcaagaatggagcgaccgggaacaaacgcggactggttgtcagagatacactgaggcaatacattcttcaacctgtttgctaacactttgg 31932905  T
Q  261 aaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttggaat 339  Q
    | || ||||| ||||| ||||| |  |  ||||| | ||||||||| ||||||||||||||||  |||||||| |||||    
T  31932904 atataattttatataacacattgcatagtgctattggccgccaatctttcatgctaacctgcgtagaacctttaggaat 31932826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 339
Target Start/End: Complemental strand, 49640385 - 49640111
Alignment:
Q  65 cgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctaccataa 164  Q
    |||||||| ||||| ||||| || ||||||| |||||| ||| ||||||| || || |||||  | | ||||||||| | ||  || ||  | ||||||     
T  49640385 cgatcataggctttgctaatgtcaagtttcagagcaacatacctgtcttcgcctcgcgtcttgattttcataaaatgcaaaacttcgattacgaccatag 49640286  T
Q  165 cattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacacctttaaaat 264  Q
    ||||||| |  || || || ||| ||||||||||| ||||  | || || || |||||||||||||| | |||||||||||||||||  |||||  ||||    
T  49640285 cattatctaggatagacctccccggaacaaaagcagattggttatcagaaatgcattgagacaaaactttcttcaacctgtttgctagtaccttggaaat 49640186  T
Q  265 gattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttggaat 339  Q
     |||||||| || |||||||  |  |||||||  |||||||||||||| ||||| ||||   |||||||||||||    
T  49640185 aattttgtacaagacattacaaagtgctatagggcgccaatccttcatactaacatgcgcataaccttttggaat 49640111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 17784428 - 17784328
Alignment:
Q  235 cttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaacctttt 334  Q
    |||||||| |||||||||||| ||  |||||||||||||||| |||||||  |  |||||||  ||||| |||||||||||||||||||  |||||||||    
T  17784428 cttcaaccggtttgctaacactttcgaaatgattttgtataacacattacaaagtgctatagggcgccagtccttcatgctaacctgcgtagaacctttt 17784329  T
Q  335 g 335  Q
    |    
T  17784328 g 17784328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 19085947 - 19085847
Alignment:
Q  235 cttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaacctttt 334  Q
    |||||||| |||||||||||| ||  |||||||||||||||| |||||||  |  |||||||  ||||| |||||||||||||||||||  |||||||||    
T  19085947 cttcaaccggtttgctaacactttcgaaatgattttgtataacacattacaaagtgctatagggcgccagtccttcatgctaacctgcgtagaacctttt 19085848  T
Q  335 g 335  Q
    |    
T  19085847 g 19085847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 19093055 - 19092955
Alignment:
Q  235 cttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaacctttt 334  Q
    |||||||| |||||||||||| ||  |||||||||||||||| |||||||  |  |||||||  ||||| |||||||||||||||||||  |||||||||    
T  19093055 cttcaaccggtttgctaacactttcgaaatgattttgtataacacattacaaagtgctatagggcgccagtccttcatgctaacctgcgtagaacctttt 19092956  T
Q  335 g 335  Q
    |    
T  19092955 g 19092955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 339
Target Start/End: Original strand, 31663292 - 31663570
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||||||||| ||||| || ||||| | |||||| ||| | ||||| || | |||||| |  | ||| |||||||| |  ||||| ||||||    
T  31663292 catacgatcatatgctttgctaatgtcaagtttgagagcaacatacgtatcttccccgcatgtcttggctttcatgaaatgtaggacttcaattgctacc 31663391  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    || |||||||| |  ||||| |  ||  ||||||| ||  | ||  |||| || ||||| |||| ||| |||| ||||||||||||||||||||| ||      
T  31663392 atgacattatcaagaatggagcgaccgggaacaaacgcggactggttgtcagatatacactgaggcaatacattcttcaacctgtttgctaacactttgg 31663491  T
Q  261 aaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttggaat 339  Q
    | || ||||| ||||| ||||| |  |  ||||| | ||||||||| ||||||||||||||||  |||||||| |||||    
T  31663492 atataattttatataacacattgcatagtgctattggccgccaatctttcatgctaacctgcgtagaacctttaggaat 31663570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 339
Target Start/End: Complemental strand, 31952292 - 31952160
Alignment:
Q  207 tgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatc 306  Q
    |||| |||||||| |||| ||| |||| ||||||||||||||||||||| ||  | || ||||| ||||| ||||| |  |  ||||| | |||||||||    
T  31952292 tgtcagagatacactgaggcaatacattcttcaacctgtttgctaacactttggatataattttatataacacattgcatagtgctattggccgccaatc 31952193  T
Q  307 cttcatgctaacctgcgaggaaccttttggaat 339  Q
     ||||||||||||||||  |||||||| |||||    
T  31952192 tttcatgctaacctgcgtagaacctttaggaat 31952160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 36788433 - 36788348
Alignment:
Q  68 tcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaat 153  Q
    ||||| |||||||||||||| |||||||||||||| ||| |||| ||  | |||||||| || | ||||||||||| || ||||||    
T  36788433 tcataagctttactaatatctagtttcaaagcaacatacatgtcctcatcgcgtgtcttggttttcataaaatgtaaaacctcaat 36788348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 17784608 - 17784492
Alignment:
Q  55 ctagtacatacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatc 154  Q
    ||||| |||||||||||| |||||  ||||||| ||||| | || ||| ||| ||||||| ||  | ||||| |  | ||||||||||| || ||||||     
T  17784608 ctagtccatacgatcataggctttgataatatcaagttttagagaaacatacctgtcttcccctagcgtcttggctttcataaaatgtaaaacctcaatt 17784509  T
Q  155 gctaccataacattatc 171  Q
    ||||||||| |||||||    
T  17784508 gctaccatagcattatc 17784492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 19086127 - 19086011
Alignment:
Q  55 ctagtacatacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatc 154  Q
    ||||| |||||||||||| |||||  ||||||| ||||| | || ||| ||| ||||||| ||  | ||||| |  | ||||||||||| || ||||||     
T  19086127 ctagtccatacgatcataggctttgataatatcaagttttagagaaacatacctgtcttcccctagcgtcttggctttcataaaatgtaaaacctcaatt 19086028  T
Q  155 gctaccataacattatc 171  Q
    ||||||||| |||||||    
T  19086027 gctaccatagcattatc 19086011  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 339
Target Start/End: Original strand, 17244831 - 17245109
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| ||||| ||||| || ||||||| || ||| ||| ||||||| || || ||||| || | ||||||||| | ||  || || || |||    
T  17244831 catacgatcataggctttgctaatgtcaagtttcagaggaacatacctgtcttcgcctcgcgtcttggttttcataaaatgcaaaacttcgattgcgacc 17244930  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    ||| ||||||| |  || ||||| ||| ||||||||||  ||||  | |||||||| |||||||||||||| | ||||||||||||||| |  |||||      
T  17244931 atagcattatctaggatagatctccccggaacaaaagcggattggttatctgagatgcattgagacaaaactttcttcaacctgtttgcgagtaccttgg 17245030  T
Q  261 aaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttggaat 339  Q
    |||| ||||| || || |||||||  |  |||||||  |||||||||||||| ||||||||||  ||||||||||||||    
T  17245031 aaataattttatacaagacattacaaagtgctatagggcgccaatccttcatactaacctgcgtagaaccttttggaat 17245109  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 8864588 - 8864726
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||| |||||||| ||||||||||| |||||||||||||| ||  |||| |  ||||  |||||||||| |||||| || | || ||| |||||||||    
T  8864588 catacggtcatatgccttactaatatcaagtttcaaagcaacataactgtcattgcccctcgtcttagtcttcataaagtgaacaacctcgatcgctacc 8864687  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagca 199  Q
    ||| | |||||||  ||||| || |||||||||||||||    
T  8864688 atagccttatccagaatggacctacccagaacaaaagca 8864726  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 41598667 - 41598540
Alignment:
Q  212 gagatacattgagacaaaacatgcttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttca 311  Q
    |||||||| || |||||||||| ||||||||||||||||||||| ||  | || ||||| ||||| ||||| |  |  ||||| | ||||||||| ||||    
T  41598667 gagatacactgggacaaaacattcttcaacctgtttgctaacactttagatataattttatataacacattgcatagtgctattggccgccaatctttca 41598568  T
Q  312 tgctaacctgcgaggaaccttttggaat 339  Q
    | |||||||||| ||||||||| |||||    
T  41598567 tactaacctgcgtggaacctttaggaat 41598540  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 4646668 - 4646717
Alignment:
Q  290 gctatagaccgccaatccttcatgctaacctgcgaggaaccttttggaat 339  Q
    ||||| ||||||||||| ||||||||||||||||  ||||||||||||||    
T  4646668 gctattgaccgccaatctttcatgctaacctgcgtagaaccttttggaat 4646717  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 339
Target Start/End: Complemental strand, 26905302 - 26905024
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    ||||||||||||||||||||||||||| || || |||||||| ||| |||| |   | || || || ||   |||||||||||| | |||||| || |||    
T  26905302 catacgatcatatgctttactaatatcaagctttaaagcaacatacctgtccttaacacgggttttggttctcataaaatgtagcatctcaatagcaacc 26905203  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    ||| |||| || || |||||||||||| | || |||||| | ||| |||| || |||||||||||||||||    ||||||||||||||||| |||||      
T  26905202 atagcattgtctaagatggatcttcccgggacgaaagcagactgattgtcggatatacattgagacaaaacccctttcaacctgtttgctaagaccttcg 26905103  T
Q  261 aaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttggaat 339  Q
    |||| ||||| || | ||||||||  |  || || |  ||||||||   ||||||||||||||| |||||||| |||||    
T  26905102 aaataattttataaagaacattacatagagcaatgggacgccaatcgcgcatgctaacctgcgaagaacctttcggaat 26905024  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 339
Target Start/End: Original strand, 29338246 - 29338524
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| ||||| ||||| || ||||||| |||||| ||| ||||||| |  || ||||| || | ||||||||| | ||| || || || |||    
T  29338246 catacgatcataggctttgctaatgtcaagtttcagagcaacatacctgtcttcgcgtcgcgtcttggttttcataaaatgcaaaaattcgattgcgacc 29338345  T
Q  161 ataacattatccaatatggatcttcccagaa-caaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttt 259  Q
    ||| ||||||| |  || ||||| ||||||| |||||||  ||||  | |||||||| |||||||||||||| | ||||||||||||||| |  |||||     
T  29338346 atagcattatctaggatagatct-cccagaaacaaaagcggattggttatctgagatgcattgagacaaaactttcttcaacctgtttgcgaggaccttg 29338444  T
Q  260 aaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttggaat 339  Q
     |||| ||||| || || |||||||  |  | |||||  ||||||||| |||  ||||||||||  ||||||||||||||    
T  29338445 gaaataattttatacaagacattacaaagtgttatagggcgccaatccctcaaactaacctgcgtagaaccttttggaat 29338524  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 284
Target Start/End: Complemental strand, 22186639 - 22186428
Alignment:
Q  73 tgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctaccataacattatcc 172  Q
    ||||||||||||||| ||||||| |||||| ||| ||||||| || || |||||||| | |||||||||||| |  || || |  || ||| |||| |||    
T  22186639 tgctttactaatatcaagtttcagagcaacatacctgtcttcaccacgcgtcttagttttcataaaatgtagcacttcgatggagactatagcattgtcc 22186540  T
Q  173 aatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacacctttaaaatgattttgt 272  Q
    || ||||| || ||  | ||||||||| ||||  |||| || |||||||||||||| || | |||||| || ||||| | ||||||  |||| ||||| |    
T  22186539 aagatggacctccctgggacaaaagcagattggttgtcagaaatacattgagacaacactttcttcaatctatttgcgagcaccttggaaataattttat 22186440  T
Q  273 ataaaacattac 284  Q
    | || |||||||    
T  22186439 acaagacattac 22186428  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 336
Target Start/End: Complemental strand, 14503509 - 14503234
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| ||||| |||||||| ||||| | || ||| ||| ||||||| || || ||||| |  | ||||||||||| || |||||| ||||||    
T  14503509 catacgatcataggctttgctaatatcaagttttagagaaacatacctgtcttcccctcgcgtcttggctttcataaaatgtaaaacctcaattgctacc 14503410  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    ||| ||||||| || || || | | |  | || || ||  ||||| |||| || || |||| || ||  || | ||||||||  ||||||||||| ||      
T  14503409 atagcattatctaaaatcgagcgttctgggacgaaggcggattgattgtcggaaatgcatttaggcagcactttcttcaaccgatttgctaacactttcg 14503310  T
Q  261 aaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttgg 336  Q
    |||||||||||||||| |||||||  |  | |||||  ||| | ||||||||||||||||||   |||||||||||    
T  14503309 aaatgattttgtataacacattacaaagtgttatagggcgctagtccttcatgctaacctgcttagaaccttttgg 14503234  T

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Target: scaffold0252 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 339
Target Start/End: Complemental strand, 5528 - 5412
Alignment:
Q  223 agacaaaacatgcttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgc 322  Q
    ||||||||||||||||||||||||| ||||||| ||  | || ||||| ||||||||||| |  |  ||||| | ||||||||| |||||||||||||||    
T  5528 agacaaaacatgcttcaacctgtttcctaacactttagatataattttatataaaacattgcaaagtgctattggccgccaatctttcatgctaacctgc 5429  T
Q  323 gaggaaccttttggaat 339  Q
    ||  ||||||| |||||    
T  5428 gaataacctttaggaat 5412  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 336
Target Start/End: Complemental strand, 30857150 - 30856875
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| ||||| |||||||| ||||| | || ||| ||  ||||||| || || ||||| |  | ||||||||||| || |||||| ||||||    
T  30857150 catacgatcataggctttgctaatatcaagttttagagaaacatatctgtcttcccctcgcgtcttggctttcataaaatgtaaaacctcaattgctacc 30857051  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    ||| ||||||| || || || | | |  | || || ||  ||||| |||| || || |||| || ||  || | |||||||| |||||||||||| ||      
T  30857050 atagcattatctaaaatcgagcgttctgggacgaaggcggattgattgtcggaaatgcatttaggcagcactttcttcaaccggtttgctaacactttcg 30856951  T
Q  261 aaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttgg 336  Q
    |||||||||||||||| |||||||  |  |||||||  ||| | |||||||||||||||||||  |||||||||||    
T  30856950 aaatgattttgtataacacattacaaagtgctatagggcgctagtccttcatgctaacctgcgtagaaccttttgg 30856875  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 55225399 - 55225289
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| ||||| |||||||| ||||| | || ||| ||| ||||||| || ||  |||| |  | ||||||||||| || |||||| ||||||    
T  55225399 catacgatcataggctttgctaatatcaagttttagagaaacatacctgtcttcccctcgcctcttggctttcataaaatgtaaaacctcaattgctacc 55225300  T
Q  161 ataacattatc 171  Q
    ||| |||||||    
T  55225299 atagcattatc 55225289  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 336
Target Start/End: Complemental strand, 22290164 - 22289889
Alignment:
Q  61 catacgatcatatgctttactaatatcgagtttcaaagcaacgtacttgtcttctccccgtgtcttagtctgcataaaatgtagaaactcaatcgctacc 160  Q
    |||||||||||| ||||| |||||||| ||||| | || ||| ||| ||||||| || || ||||| |  | ||||||||||| || |||||| ||||||    
T  22290164 catacgatcataggctttgctaatatcaagttttagagaaacatacctgtcttcccctcgcgtcttggctttcataaaatgtaaaacctcaattgctacc 22290065  T
Q  161 ataacattatccaatatggatcttcccagaacaaaagcaaattgactgtctgagatacattgagacaaaacatgcttcaacctgtttgctaacaccttta 260  Q
    ||| ||||||| || || || | | |  | || || ||  ||||| |||| || || |||| || ||  || | ||||||||  ||||||||||| ||      
T  22290064 atagcattatctaaaatcgagcgttctgggacgaaggcggattgattgtcggaaatgcatttaggcagcactttcttcaaccgatttgctaacactttcg 22289965  T
Q  261 aaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaaccttttgg 336  Q
    |||||||||||||||| |||||||  |  | |||||  ||| | ||||||||||||||||||   |||||||||||    
T  22289964 aaatgattttgtataacacattacaaagtgttatagggcgctagtccttcatgctaacctgcttagaaccttttgg 22289889  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 354
Target Start/End: Complemental strand, 28244265 - 28244146
Alignment:
Q  235 cttcaacctgtttgctaacacctttaaaatgattttgtataaaacattacgcaacgctatagaccgccaatccttcatgctaacctgcgaggaacctttt 334  Q
    ||||||||  ||||||||||| ||  |||||||||||||||| |||||||  |  |||||||  || || ||||||||| |||||||||  |||||||||    
T  28244265 cttcaaccaatttgctaacactttcgaaatgattttgtataacacattacaaagtgctataggtcgtcagtccttcatgttaacctgcgtagaacctttt 28244166  T
Q  335 ggaattaacgcaatattagt 354  Q
    || || |  |||||||||||    
T  28244165 gggataagggcaatattagt 28244146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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