View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_high_28 (Length: 325)
Name: NF10233A_high_28
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_high_28 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 30778441 - 30778747
Alignment:
| Q |
19 |
atcaaaggctaagttgttaattttcgattgtaaccatctaaaagaagaaaacttcacgatgttcaccggttgctgtatcgattgatctatatgtcgaaaa |
118 |
Q |
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| T |
30778441 |
atcaaaagctaagttgttaattttcggttgtaaccatctaaaagaagaaaatttcacgatattcaccggttgttgtatcgattg-tctatatgtcgaaaa |
30778539 |
T |
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| Q |
119 |
atacgactattcttgtccttccaaac-tcttaaacaaccgacaactaaatcacatggagacgtcttcttccacggttaccctagcctatcaatcccccat |
217 |
Q |
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| T |
30778540 |
atacgactattcttatccttccaaatatcttaaacaaccgacaactaaatcacatggagacgtcttcttccaccgctatcctagcctatcaatcccccat |
30778639 |
T |
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| Q |
218 |
gctagcctcctaatctccactaaggtaacatctttatcaaacgtaaatcaaaaagacgccaaaacctaacccacaaacttgcaccatgcagtcaaagatc |
317 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
30778640 |
gctagcctcctaatctccactaaggtaacacctttatcaaacgtaaatcaaaaggacgccaaaacctaacccacaaaccttcaccatgcagtcaaagatc |
30778739 |
T |
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| Q |
318 |
acaccaaa |
325 |
Q |
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| T |
30778740 |
acaccaaa |
30778747 |
T |
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