View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_high_33 (Length: 287)
Name: NF10233A_high_33
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 38867590 - 38867874
Alignment:
| Q |
4 |
atcaaggcaatgatatggtgaatgtctgtgtgaactgtgaagggtctatt-cagaagaatgaaactaaatagtaaatagtagttgaataaaatacataca |
102 |
Q |
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| T |
38867590 |
atcaaggcaatgatatggtgagtgtctgtgtgaactgtgaagggtctatttcagaagaatgaaactaaatagtaaatagtagttgaataaaatacataca |
38867689 |
T |
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| Q |
103 |
gtttgagaagttcatgcttcaaaagaatgaaacagcnnnnnnnnnn--------catcaaataacactcattcaacccctttcaatctagaaatatggag |
194 |
Q |
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| T |
38867690 |
atatcagaagttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaaaaaacatcaaataacactcattcaacccctttcaatctagaaatatggag |
38867789 |
T |
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| Q |
195 |
tattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgc |
279 |
Q |
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| T |
38867790 |
tatcattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgc |
38867874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 38598698 - 38598804
Alignment:
| Q |
155 |
ataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattg |
254 |
Q |
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| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaatgacaattggcaaaagaaaagtatagcactattg |
38598797 |
T |
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| Q |
255 |
agccact |
261 |
Q |
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| T |
38598798 |
agtcact |
38598804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 39953790 - 39953726
Alignment:
| Q |
158 |
acactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaatt |
222 |
Q |
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| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatt |
39953726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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