View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_102 (Length: 306)
Name: NF10233A_low_102
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_102 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 37704509 - 37704454
Alignment:
| Q |
100 |
ataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704509 |
ataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 37698691 - 37698636
Alignment:
| Q |
100 |
ataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
155 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
37698691 |
ataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 37437573 - 37437520
Alignment:
| Q |
102 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
155 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
37437573 |
aagggaatagctagactgaatttgtaaacaatctaataagtcagactttttggt |
37437520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 37699030 - 37698974
Alignment:
| Q |
100 |
ataagggaatacgtagactcaat--ttgcaaacaatctaataagtcaacctttttgg |
154 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||| |||| |||||||| |
|
|
| T |
37699030 |
ataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University