View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_104 (Length: 303)

Name: NF10233A_low_104
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_104
NF10233A_low_104
[»] scaffold0049 (1 HSPs)
scaffold0049 (2-297)||(58137-58423)
[»] chr1 (20 HSPs)
chr1 (217-287)||(49557087-49557157)
chr1 (217-288)||(49517016-49517087)
chr1 (227-288)||(30371104-30371165)
chr1 (228-291)||(34179922-34179985)
chr1 (217-291)||(38578473-38578547)
chr1 (219-280)||(15360842-15360903)
chr1 (231-288)||(27738233-27738290)
chr1 (228-288)||(25479538-25479598)
chr1 (228-288)||(28467360-28467420)
chr1 (217-284)||(4200175-4200242)
chr1 (229-288)||(7218127-7218186)
chr1 (217-288)||(17269196-17269267)
chr1 (217-288)||(40304107-40304178)
chr1 (217-255)||(14737791-14737829)
chr1 (221-286)||(28938052-28938117)
chr1 (222-288)||(36070201-36070267)
chr1 (217-255)||(36641821-36641859)
chr1 (217-286)||(29007771-29007840)
chr1 (244-288)||(25006087-25006131)
chr1 (218-254)||(44936677-44936713)
[»] scaffold0024 (1 HSPs)
scaffold0024 (217-291)||(27522-27596)
[»] chr7 (10 HSPs)
chr7 (222-288)||(1417215-1417281)
chr7 (222-291)||(30456500-30456569)
chr7 (217-275)||(28165037-28165095)
chr7 (217-255)||(39591553-39591591)
chr7 (217-287)||(49060486-49060556)
chr7 (217-254)||(5276170-5276207)
chr7 (228-293)||(9527138-9527203)
chr7 (222-291)||(30496655-30496724)
chr7 (228-288)||(5006562-5006622)
chr7 (217-285)||(45813236-45813304)
[»] chr4 (15 HSPs)
chr4 (217-291)||(49219085-49219159)
chr4 (222-293)||(24929444-24929515)
chr4 (219-288)||(8130122-8130191)
chr4 (229-285)||(18630638-18630694)
chr4 (236-288)||(32920453-32920505)
chr4 (222-281)||(4071833-4071892)
chr4 (222-285)||(10192235-10192298)
chr4 (217-288)||(29373940-29374011)
chr4 (217-275)||(30024646-30024704)
chr4 (222-255)||(41701527-41701560)
chr4 (223-288)||(55870394-55870459)
chr4 (214-254)||(23815313-23815353)
chr4 (217-288)||(27623581-27623655)
chr4 (222-282)||(44638232-44638292)
chr4 (228-288)||(53626733-53626793)
[»] chr6 (14 HSPs)
chr6 (217-288)||(4006660-4006731)
chr6 (217-256)||(28531626-28531665)
chr6 (217-291)||(9668035-9668109)
chr6 (228-288)||(2727909-2727969)
chr6 (214-254)||(5328917-5328957)
chr6 (217-296)||(10452405-10452484)
chr6 (217-288)||(29274282-29274353)
chr6 (237-287)||(5550098-5550148)
chr6 (217-255)||(24836285-24836323)
chr6 (222-255)||(5551413-5551446)
chr6 (228-288)||(281901-281961)
chr6 (216-288)||(1402941-1403013)
chr6 (214-254)||(2027493-2027533)
chr6 (228-288)||(11340678-11340738)
[»] chr3 (15 HSPs)
chr3 (217-288)||(24235736-24235807)
chr3 (217-286)||(48364934-48365003)
chr3 (217-286)||(48397592-48397661)
chr3 (217-288)||(10101529-10101600)
chr3 (217-288)||(10212454-10212525)
chr3 (217-283)||(20192664-20192730)
chr3 (221-287)||(22214735-22214801)
chr3 (217-289)||(48323767-48323839)
chr3 (214-254)||(54775071-54775111)
chr3 (217-288)||(24887336-24887407)
chr3 (217-289)||(1395617-1395689)
chr3 (230-278)||(26599137-26599185)
chr3 (217-285)||(30956682-30956750)
chr3 (217-285)||(30972494-30972562)
chr3 (217-265)||(39971265-39971313)
[»] chr8 (9 HSPs)
chr8 (217-291)||(38561672-38561746)
chr8 (236-288)||(6509356-6509408)
chr8 (224-284)||(34551073-34551133)
chr8 (232-288)||(34770853-34770909)
chr8 (217-288)||(12361138-12361209)
chr8 (217-288)||(42597347-42597418)
chr8 (217-254)||(26820145-26820182)
chr8 (217-254)||(40728505-40728542)
chr8 (218-254)||(29699201-29699237)
[»] chr2 (10 HSPs)
chr2 (231-288)||(11513858-11513915)
chr2 (217-288)||(10143118-10143189)
chr2 (217-291)||(43199360-43199434)
chr2 (214-254)||(43199186-43199226)
chr2 (217-288)||(39567849-39567920)
chr2 (222-284)||(10285304-10285366)
chr2 (217-291)||(28803556-28803630)
chr2 (217-254)||(3458603-3458640)
chr2 (232-288)||(6993777-6993833)
chr2 (217-285)||(11344340-11344408)
[»] chr5 (9 HSPs)
chr5 (218-289)||(37690689-37690760)
chr5 (218-288)||(37526252-37526322)
chr5 (218-288)||(37588413-37588483)
chr5 (180-255)||(21782655-21782727)
chr5 (221-288)||(39823174-39823241)
chr5 (222-282)||(42181151-42181211)
chr5 (217-288)||(18704089-18704159)
chr5 (222-284)||(14295457-14295519)
chr5 (222-291)||(4855649-4855718)
[»] scaffold0508 (1 HSPs)
scaffold0508 (217-288)||(9828-9899)
[»] scaffold0053 (1 HSPs)
scaffold0053 (222-288)||(20130-20196)
[»] scaffold0549 (2 HSPs)
scaffold0549 (228-288)||(1777-1837)
scaffold0549 (228-288)||(3867-3927)


Alignment Details
Target: scaffold0049 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 58423 - 58137
Alignment:
Q  2 tgtcgaagaatatttgcttgttatatctttgcctccaccagagaagaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagc 101  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58423 tgtcaaagaatatttgcttgttatatctttgtctccaccagagaagaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagc 58324  T
Q  102 taaggcagctttgtgactttttggtcgattagaggattgtaaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaatta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58323 taaggcagctttgtgactttttggtcgattagaggattgtaaatcttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaatta 58224  T
Q  202 tgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 297  Q
    ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58223 tgtg---------tttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 58137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 49557087 - 49557157
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 287  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| || || |||||||||||||||||||    
T  49557087 taagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 49517016 - 49517087
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| ||||||||||||||| |||||||||||| || || || || |||||||| |||||||||||    
T  49517016 taagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 30371104 - 30371165
Alignment:
Q  227 atataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||||||||| ||||| |||||| || || ||||| ||||||||||||||||||||    
T  30371104 atataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 34179985 - 34179922
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    ||||||||||||||| |||||||||||| || ||||| || |||||||  ||||||||||||||    
T  34179985 tataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcataaact 34179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 38578473 - 38578547
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    |||| ||||| ||||||||||||||||||||||| ||||  | ||  |||| |||||||||||||| ||||||||    
T  38578473 taagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgtttacataaact 38578547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 15360842 - 15360903
Alignment:
Q  219 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgt 280  Q
    |||||||| ||||||||||||||| |||||||||||  || || ||||| ||||||||||||    
T  15360842 agttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 27738290 - 27738233
Alignment:
Q  231 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||||| |||||||||||| || || ||||| ||||||| ||||||||||||    
T  27738290 aacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 25479538 - 25479598
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||| |||||||| |||| ||||||| || || ||||| ||||||||||||||||||||    
T  25479538 tataaccaaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataa 25479598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 28467420 - 28467360
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||||||| ||||||||||||  | || ||||| |||| |||||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 4200175 - 4200242
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 284  Q
    |||||||||| ||||||||||||||| |||||||||| | || || ||||| ||||||  ||||||||    
T  4200175 taagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctatatattgttttc 4200242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 7218186 - 7218127
Alignment:
Q  229 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||| ||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  7218186 ataataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 17269196 - 17269267
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| || ||||||||  || |||||||||||| || || ||||| || |||||||||||||||||    
T  17269196 taagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataa 17269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 40304178 - 40304107
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||||||||||||||||||| ||||| ||| || || || ||||| | |||||| |||||||||||    
T  40304178 taagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcataa 40304107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 14737829 - 14737791
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaat 255  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaat 14737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 28938052 - 28938117
Alignment:
Q  221 ttatttatataacaaaa-gataacataaagtcaaatagtattaatatacgctataagttgttttcat 286  Q
    |||||| |||||||||| |||||||||| |||||||  | || ||||||||||||||||||||||||    
T  28938052 ttatttttataacaaaaagataacataa-gtcaaatcattttcatatacgctataagttgttttcat 28938117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 36070201 - 36070267
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||| ||||||||||||||| ||||||| |||| || ||   ||| ||||||||||||||||||||    
T  36070201 tatttttataacaaaagataaaataaagttaaattgtcttcggataagctataagttgttttcataa 36070267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 36641821 - 36641859
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaat 255  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  36641821 taagttatttctataacaaaagataaaataaagtcaaat 36641859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 29007840 - 29007771
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 286  Q
    |||||||||| |||||||||||| ||  ||||||||||   | || ||||| ||||||||||||||||||    
T  29007840 taagttatttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 25006131 - 25006087
Alignment:
Q  244 ataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||||| || || ||||| ||||||||||||||||||||    
T  25006131 ataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 44936713 - 44936677
Alignment:
Q  218 aagttatttatataacaaaagataacataaagtcaaa 254  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaa 44936677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 27522 - 27596
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    |||||||||| ||||||| ||||||| |||||||||||| || || |||||  ||||||||||||||||||||||    
T  27522 taagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaact 27596  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 1417215 - 1417281
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||||||||||||| |||||||||||| || || ||||| || |||||||||||||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 30456569 - 30456500
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    ||||| || |||||||||||| |||||||||||| || || ||||| | ||||||| |||||||||||||    
T  30456569 tatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttataagtggttttcataaact 30456500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 28165037 - 28165095
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 275  Q
    |||||| ||| ||||||||||||||| || ||||||||| || |||||||| |||||||    
T  28165037 taagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataa 28165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 39591591 - 39591553
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaat 255  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39591591 taagttatttctataacaaaagataaaataaagtcaaat 39591553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 49060486 - 49060556
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 287  Q
    |||| ||||| |||||||||| |||| ||||||||||||  | || ||||| |||||||||| ||||||||    
T  49060486 taagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 5276170 - 5276207
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaa 254  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  5276170 taagctatttttataacaaaagataacataaagtcaaa 5276207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 9527203 - 9527138
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 293  Q
    ||||||||||||||  |||||||||||  || || |||||  ||||||||||||||||||| ||||    
T  9527203 tataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagctct 9527138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 30496655 - 30496724
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    ||||| |||||||||| |||| |||||||||||| || ||  ||||  ||||| ||||||||||||||||    
T  30496655 tatttctataacaaaatataaaataaagtcaaattgttttcgtataacctataggttgttttcataaact 30496724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 5006622 - 5006562
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||||||| |||||||||||  || || ||||| | ||||| ||||||||||||    
T  5006622 tataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataa 5006562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 45813304 - 45813236
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 285  Q
    |||| ||||| |||| |||||||||| |||||||||| | || || |||||  ||||||||||||||||    
T  45813304 taagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 49219085 - 49219159
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    |||||||||| |||||||||| |||| ||||||||||||  | || ||||| |||||||||||||||||||||||    
T  49219085 taagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaact 49219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 24929444 - 24929515
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 293  Q
    ||||| ||||||||||||||| |||||||| ||  || || ||| | |||||||||||||||||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactct 24929515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 8130122 - 8130191
Alignment:
Q  219 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||| ||||||||||||||||||||||||||||  | || ||||| |||||||  |||||||||||    
T  8130122 agttctttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcataa 8130191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 18630638 - 18630694
Alignment:
Q  229 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 285  Q
    |||||||||||||| |||||||||| | || || ||||| |||||||||||||||||    
T  18630638 ataacaaaagataaaataaagtcaattggttttcatataagctataagttgttttca 18630694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 32920505 - 32920453
Alignment:
Q  236 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||| |||||||||||| || |||||| | ||||||||||||||||||||    
T  32920505 aagataaaataaagtcaaatcgttttaatagaagctataagttgttttcataa 32920453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 4071833 - 4071892
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 281  Q
    ||||| ||||||||||||||| ||||||||||||  | || ||||| |||||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgtt 4071892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 10192235 - 10192298
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 285  Q
    ||||| ||||||||||||||  |||||||||||| || || ||||| | |||||||||||||||    
T  10192235 tatttttataacaaaagatagaataaagtcaaattgttttcatataagttataagttgttttca 10192298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 29374011 - 29373940
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||| ||||||| ||||||| |||| ||||||  ||||| ||||| ||||||| ||||||||||||    
T  29374011 taagctatttctataacagaagataaaataatgtcaaaatgtattcatataagctataatttgttttcataa 29373940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 30024646 - 30024704
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 275  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| |||||||    
T  30024646 taagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctataa 30024704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 41701560 - 41701527
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaat 255  Q
    ||||||||||||||||||||| ||||||||||||    
T  41701560 tatttatataacaaaagataaaataaagtcaaat 41701527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 55870459 - 55870394
Alignment:
Q  223 atttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||||||||||| | |||||||||||  || || | ||| ||||||||||||||||||||    
T  55870459 atttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataa 55870394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 23815313 - 23815353
Alignment:
Q  214 gtttaagttatttatataacaaaagataacataaagtcaaa 254  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  23815313 gtttaagttatttctataacaaaagataaaataatgtcaaa 23815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 27623581 - 27623655
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctat---aagttgttttcataa 288  Q
    |||| ||||| ||||||||||||||| |||||||||||   | |||||||| |||||   |||||||||||||||    
T  27623581 taagatatttgtataacaaaagataaaataaagtcaaactattttaatataagctataagaagttgttttcataa 27623655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 44638292 - 44638232
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 282  Q
    ||||||||||||||||||| | ||||||| ||||   ||| ||||| ||||||||||||||    
T  44638292 tatttatataacaaaagattatataaagttaaattacattcatataagctataagttgttt 44638232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 53626733 - 53626793
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||||||| ||||| |||||  || || ||||| |||||||| |||||||||||    
T  53626733 tataacaaaagataaaataaattcaaaatgttttcatataagctataagctgttttcataa 53626793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 4006660 - 4006731
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||| ||||||||| ||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  4006660 taagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 28531665 - 28531626
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaata 256  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28531665 taagttatttatataacaaaagataaaataaagtcaaata 28531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 9668109 - 9668035
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    |||| ||||| ||||||||||||||||||| |||| ||| || || ||||| |||| || |||||||||||||||    
T  9668109 taagctatttgtataacaaaagataacatagagtcgaattgttttcatataagctacaatttgttttcataaact 9668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 2727969 - 2727909
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||||||||   ||| |||||| ||||| ||||| ||||||||||||||||||||    
T  2727969 tataacaaaagataaacaaaaatcaaattgtattgatataagctataagttgttttcataa 2727909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 5328917 - 5328957
Alignment:
Q  214 gtttaagttatttatataacaaaagataacataaagtcaaa 254  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  5328917 gtttaagttatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 10452484 - 10452405
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactctctc 296  Q
    |||| ||||| |||||||||| |||| ||||| |||||   | || ||||| |||||||||||||| |||||||||||||    
T  10452484 taagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccataaactctctc 10452405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 29274353 - 29274282
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||| |||| |||||||||| |||||||||||| || || ||||| |||||||  |||||||||||    
T  29274353 taagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 5550098 - 5550148
Alignment:
Q  237 agataacataaagtcaaatagtattaatatacgctataagttgttttcata 287  Q
    ||||||||||||||||||| || || ||||| |||||||| ||||||||||    
T  5550098 agataacataaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 24836323 - 24836285
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaat 255  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  24836323 taagttatttctataacaaaagataaaataaagtcaaat 24836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 5551413 - 5551446
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaat 255  Q
    ||||||||||||||||||||| ||||||||||||    
T  5551413 tatttatataacaaaagataaaataaagtcaaat 5551446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 281961 - 281901
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||||||| |||||||||| | || || ||||| |||||||| ||| |||||||    
T  281961 tataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataa 281901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 1402941 - 1403013
Alignment:
Q  216 ttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||| ||||| ||||||||||||||| ||||||| |||   | || ||||| ||||||| ||||||||||||    
T  1402941 ttaagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataa 1403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 2027533 - 2027493
Alignment:
Q  214 gtttaagttatttatataacaaaagataacataaagtcaaa 254  Q
    ||||||| ||||| ||||||||||||||| |||||||||||    
T  2027533 gtttaagctatttttataacaaaagataaaataaagtcaaa 2027493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 11340738 - 11340678
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  11340738 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 11340678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 24235807 - 24235736
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| ||||||||||||||| |||||||||||   | | |||||| ||||||||||||||||||||    
T  24235807 taagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataa 24235736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 48365003 - 48364934
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 286  Q
    ||||||||||  |||||||||||||| |||||||||||| || || || ||||| |||||||||||||||    
T  48365003 taagttatttcgataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 48397592 - 48397661
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 286  Q
    |||||||||| ||||| ||||||||| |||||||||||| || || || || ||||||||||||||||||    
T  48397592 taagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 10101600 - 10101529
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10101600 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 10212525 - 10212454
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10212525 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 20192730 - 20192664
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtttt 283  Q
    |||| ||||||||||||||||||||| ||||||||||| ||| || |||||  ||||||| ||||||    
T  20192730 taagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttt 20192664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 22214801 - 22214735
Alignment:
Q  221 ttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 287  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||| |||||  ||||||||||||||||||    
T  22214801 ttatttctataacaaaggataaaataaagtgaaattgtattcatataacctataagttgttttcata 22214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 48323767 - 48323839
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 289  Q
    |||||||||| ||||| ||||||||| |||||||||||| || ||  | || ||||||| |||||||||||||    
T  48323767 taagttatttctataataaaagataatataaagtcaaattgtttttctgtaagctataaattgttttcataaa 48323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 54775071 - 54775111
Alignment:
Q  214 gtttaagttatttatataacaaaagataacataaagtcaaa 254  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  54775071 gtttaagttatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 24887407 - 24887336
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||| |||||||| |||||| |||||||||||  ||||| ||||| |||| ||| |||||||||||    
T  24887407 taagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataa 24887336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 1395617 - 1395689
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 289  Q
    |||| ||||| ||||||||||||||| ||||||||||||  | || ||||| ||||| |  ||||||||||||    
T  1395617 taagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcataaa 1395689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 26599137 - 26599185
Alignment:
Q  230 taacaaaagataacataaagtcaaatagtattaatatacgctataagtt 278  Q
    ||||||||||||| ||||||||||||||| || ||||| | ||||||||    
T  26599137 taacaaaagataaaataaagtcaaatagttttcatataaggtataagtt 26599185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 30956750 - 30956682
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 285  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30956750 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30956682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 30972562 - 30972494
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 285  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30972562 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 39971265 - 39971313
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaata 265  Q
    ||||||| |||||||||||||||||| |||||| ||||| || ||||||    
T  39971265 taagttacttatataacaaaagataaaataaagccaaattgttttaata 39971313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 38561672 - 38561746
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    |||||||||||||||||||||||||| |||||||||||   | || || ||  ||||||||||||||||||||||    
T  38561672 taagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcataaact 38561746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 6509408 - 6509356
Alignment:
Q  236 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||| |||||||||||| ||||| ||||| |||||||| |||||||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataa 6509356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 34551073 - 34551133
Alignment:
Q  224 tttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 284  Q
    |||||||||||||||||||||| ||||||||| || || || || | ||||||||||||||    
T  34551073 tttatataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttttc 34551133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 34770853 - 34770909
Alignment:
Q  232 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||| |||||||||||| || || || || ||||||||||||||||||||    
T  34770853 acaaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 12361138 - 12361209
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| |||||  |||||||| || ||||||||| || || ||||| |||||||| |||||||||||    
T  12361138 taagttatttctataaataaagataaaatgaagtcaaattgttttcatataagctataagctgttttcataa 12361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 42597347 - 42597418
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||| ||||||||||||||| ||||||| |||| || || ||  | ||||||||||||||||||||    
T  42597347 taagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataa 42597418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 26820145 - 26820182
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaa 254  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  26820145 taagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 40728542 - 40728505
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaa 254  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40728542 taagttatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 29699201 - 29699237
Alignment:
Q  218 aagttatttatataacaaaagataacataaagtcaaa 254  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  29699201 aagttatttctataacaaaagataaaataaagtcaaa 29699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 11513858 - 11513915
Alignment:
Q  231 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 10143118 - 10143189
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| ||||||||||||||| || ||||||||  || || ||||| |||||||||| |||||||||    
T  10143118 taagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataa 10143189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 43199360 - 43199434
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    |||||||||| || |||||||||||| ||||||| ||||  | ||  |||| |||||||||||||||||||||||    
T  43199360 taagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataaact 43199434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 43199186 - 43199226
Alignment:
Q  214 gtttaagttatttatataacaaaagataacataaagtcaaa 254  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  43199186 gtttaaattatttatataacaaaagataaaataaagtcaaa 43199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 39567849 - 39567920
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||| ||||| ||||||||||||||| ||||||| |||| || | || ||| |||||||| |||||||||||    
T  39567849 taagatatttctataacaaaagataaaataaagttaaattgtttcaagataagctataagctgttttcataa 39567920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 10285304 - 10285366
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 284  Q
    ||||| ||||||||||| ||| |||| |||||||||  || ||||| ||||||||||||||||    
T  10285304 tatttctataacaaaagttaaaataatgtcaaataggttttatataagctataagttgttttc 10285366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 28803630 - 28803556
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    ||||||||||  |||||||||||||| |||||||||||  |  || ||||| |||| ||||||||||| ||||||    
T  28803630 taagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagctacaagttgttttcttaaact 28803556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 3458603 - 3458640
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaa 254  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  3458603 taagttatttttataacaaaagataaaataaagtcaaa 3458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 6993833 - 6993777
Alignment:
Q  232 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||| |||| |||||||  |||| ||||| |||||| |||||||||||||    
T  6993833 acaaaagataaaataaggtcaaattatattcatataagctataggttgttttcataa 6993777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 11344408 - 11344340
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 285  Q
    |||| ||||| ||||||||||||||| | |||||||||| || || ||| | ||||||| |||||||||    
T  11344408 taagatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctataaattgttttca 11344340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 37690760 - 37690689
Alignment:
Q  218 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 289  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| |||||||||||||||||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataaa 37690689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 37526322 - 37526252
Alignment:
Q  218 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37526252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 37588483 - 37588413
Alignment:
Q  218 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37588413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 21782727 - 21782655
Alignment:
Q  180 gtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaat 255  Q
    ||||||| | |||||||||||| ||||||||   ||||||| ||||| ||||||||||| ||| ||||||||||||    
T  21782727 gtttggataaacaacttaattaagtgtttat---gtttaagctatttctataacaaaagctaaaataaagtcaaat 21782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 39823241 - 39823174
Alignment:
Q  221 ttatttatataacaaaagataacataaagtcaaa-tagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||||||||||||||| ||||||||||| || | || ||||| |||| |||||||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactact-ttcatataagctacaagttgttttcataa 39823174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 42181211 - 42181151
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 282  Q
    ||||| ||||||||||||||| | |||||||||| || || ||||| ||||||||||||||    
T  42181211 tatttttataacaaaagataaaacaaagtcaaatggttttcatataagctataagttgttt 42181151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 18704159 - 18704089
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| ||||||||||||||| ||||||||||    | || ||||| ||||||||||||||||||||    
T  18704159 taagttatttctataacaaaagataa-ataaagtcaagctatttttatataagctataagttgttttcataa 18704089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 14295457 - 14295519
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 284  Q
    ||||| ||||||||||||||| |||||||||||  || || ||||| |||||||| |||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 4855649 - 4855718
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 291  Q
    ||||| |||||||||| |||| ||||||| |||| ||  | ||||| | |||||||||||||||||||||    
T  4855649 tatttttataacaaaaaataaaataaagttaaattgttatcatataagttataagttgttttcataaact 4855718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 9899 - 9828
Alignment:
Q  217 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    |||||||||| |||||||||| |||| || |||||||| ||| || ||||| | |||| |||||||||||||    
T  9899 taagttatttctataacaaaaaataaaattaagtcaaaaagttttcatataagttataggttgttttcataa 9828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 20130 - 20196
Alignment:
Q  222 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||| |||||| |||||||| ||||||||||| |||  | ||||| ||||| ||||||||||||||    
T  20130 tatttctataaccaaagataaaataaagtcaaacagttatcatataagctattagttgttttcataa 20196  T

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Target: scaffold0549 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 1837 - 1777
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  1837 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 1777  T

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Target: scaffold0549; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 3927 - 3867
Alignment:
Q  228 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 288  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  3927 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 3867  T

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