View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_106 (Length: 300)
Name: NF10233A_low_106
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_106 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 21424526 - 21424429
Alignment:
| Q |
9 |
tcgtgttcgatgtttattcctaacaactgagatttgtgttttttacttttattcaaagcattattattgcagaaaccctatgtaattgaaggttgaac |
106 |
Q |
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| T |
21424526 |
tcgtgttcgatgtttattcctaacaattgagaattgtgttttttacttttattcaaagcattattattacagaaaccctatgtaattgaagattgaac |
21424429 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 21424406 - 21424333
Alignment:
| Q |
183 |
tgatttgggatttccctgaatgaatccttataataaatagtccatgttacatctatgccacataacatacatta |
256 |
Q |
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| T |
21424406 |
tgatttggaattcccttgaatgaatccttataataaatagtccatgttacatctatgccacataacatacatta |
21424333 |
T |
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