View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10233A_low_108 (Length: 300)
Name: NF10233A_low_108
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_108 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 28862582 - 28862389
Alignment:
| Q |
33 |
atcccagctgtttcctattgtattctttgtagtttgtagatgaataaggannnnnnnatctctttggacattatgtatttatttgtccatttgaatttga |
132 |
Q |
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| T |
28862582 |
atcccagttgtttcctattgtattctttgtagtttgtagatgaatcagga--------tctctttggacattatgtatttatttgtccatttga------ |
28862497 |
T |
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| Q |
133 |
tgggtgttttttgtttaccttgtatttgagactctatgatgtacttg-tttttggtactaactttatgttgtatttactcattgtgttgtaaacttttat |
231 |
Q |
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| T |
28862496 |
tgggtgttttttgtttaccttgtatttgagactttatgatgtacttgctttttggtactaactttatgttgtatttactgattgtgttgtaaatttttat |
28862397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 28865661 - 28865772
Alignment:
| Q |
33 |
atcccagctgtttcctattgtattctttgtagtttgtagatgaataaggannnnnnnatctctttggacattatgtatttatttgtccatttgaatttga |
132 |
Q |
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| T |
28865661 |
atcccagttgtttcctattgtattctttgtagtttgtagatgaatcagg--------atctctttggacattatgtatttattt-----tttctatttga |
28865747 |
T |
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| Q |
133 |
tgggtgttttttgtttaccttgtat |
157 |
Q |
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| T |
28865748 |
tggatgttatttgtttcccttgtat |
28865772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Complemental strand, 28862375 - 28862341
Alignment:
| Q |
250 |
atcacaacatatggcatggtggattatgatagtga |
284 |
Q |
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| T |
28862375 |
atcacaacatatggtatggtggattatgatagtga |
28862341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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