View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_109 (Length: 298)

Name: NF10233A_low_109
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_109
NF10233A_low_109
[»] chr7 (9 HSPs)
chr7 (8-298)||(41072287-41072577)
chr7 (107-214)||(23223300-23223406)
chr7 (107-214)||(23237380-23237486)
chr7 (118-202)||(28084824-28084908)
chr7 (100-214)||(12837895-12838009)
chr7 (113-166)||(40144964-40145017)
chr7 (85-173)||(7399822-7399910)
chr7 (102-202)||(44933042-44933141)
chr7 (123-160)||(30833456-30833493)
[»] chr4 (9 HSPs)
chr4 (99-208)||(43921091-43921200)
chr4 (100-214)||(34701201-34701315)
chr4 (123-203)||(56128592-56128672)
chr4 (83-208)||(27915206-27915331)
chr4 (83-214)||(25098886-25099017)
chr4 (85-167)||(39102035-39102117)
chr4 (139-213)||(48051717-48051791)
chr4 (123-214)||(31917636-31917727)
chr4 (132-190)||(38547481-38547539)
[»] scaffold0954 (1 HSPs)
scaffold0954 (107-214)||(46-153)
[»] chr3 (13 HSPs)
chr3 (99-208)||(43827213-43827323)
chr3 (130-190)||(15985277-15985337)
chr3 (66-185)||(31596210-31596336)
chr3 (83-190)||(31752705-31752812)
chr3 (126-185)||(43767320-43767379)
chr3 (87-166)||(50531506-50531585)
chr3 (124-214)||(23512731-23512821)
chr3 (126-183)||(37075446-37075503)
chr3 (122-167)||(41291480-41291525)
chr3 (126-166)||(29110966-29111006)
chr3 (137-185)||(30070423-30070471)
chr3 (126-190)||(44344738-44344802)
chr3 (119-167)||(52685131-52685179)
[»] chr8 (14 HSPs)
chr8 (92-208)||(38221630-38221746)
chr8 (123-214)||(2603348-2603438)
chr8 (99-166)||(11766526-11766593)
chr8 (99-214)||(32203015-32203129)
chr8 (141-209)||(42704177-42704245)
chr8 (106-208)||(5984186-5984285)
chr8 (87-173)||(7859154-7859240)
chr8 (113-166)||(5221035-5221088)
chr8 (84-213)||(13244659-13244788)
chr8 (99-167)||(5959744-5959811)
chr8 (123-185)||(36178477-36178539)
chr8 (109-190)||(5948663-5948742)
chr8 (83-156)||(35631830-35631903)
chr8 (123-214)||(41679634-41679726)
[»] chr6 (9 HSPs)
chr6 (85-190)||(9049976-9050081)
chr6 (99-208)||(29301714-29301823)
chr6 (101-216)||(6661784-6661901)
chr6 (126-172)||(2248742-2248788)
chr6 (86-166)||(342938-343018)
chr6 (97-208)||(7703001-7703112)
chr6 (126-173)||(31597556-31597603)
chr6 (121-214)||(29129298-29129391)
chr6 (99-155)||(1364336-1364391)
[»] chr1 (12 HSPs)
chr1 (122-214)||(37599623-37599715)
chr1 (85-185)||(44698020-44698120)
chr1 (90-173)||(27262777-27262860)
chr1 (85-159)||(31963039-31963113)
chr1 (88-190)||(42592699-42592801)
chr1 (122-214)||(39527023-39527115)
chr1 (83-185)||(44529244-44529346)
chr1 (86-160)||(48375424-48375498)
chr1 (92-166)||(23527240-23527314)
chr1 (129-214)||(34620612-34620697)
chr1 (86-183)||(49483598-49483694)
chr1 (94-203)||(52469828-52469937)
[»] chr2 (11 HSPs)
chr2 (92-189)||(17897826-17897923)
chr2 (119-214)||(40083483-40083579)
chr2 (87-166)||(3954472-3954551)
chr2 (96-155)||(27494817-27494876)
chr2 (83-172)||(37426556-37426645)
chr2 (126-167)||(1944770-1944811)
chr2 (86-167)||(8701035-8701116)
chr2 (145-214)||(27587878-27587947)
chr2 (123-208)||(41311724-41311809)
chr2 (129-173)||(752185-752229)
chr2 (132-208)||(12880121-12880197)
[»] chr5 (9 HSPs)
chr5 (85-185)||(844769-844869)
chr5 (122-203)||(9857801-9857881)
chr5 (120-214)||(34362459-34362551)
chr5 (137-190)||(8313636-8313689)
chr5 (88-208)||(13203125-13203245)
chr5 (85-190)||(19608765-19608870)
chr5 (85-214)||(41174296-41174425)
chr5 (69-155)||(33334116-33334202)
chr5 (126-190)||(38328661-38328725)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 41072577 - 41072287
Alignment:
Q  8 ttggtgttgtggacacaagttgatagccatatcccaaattatggaatctaataatgtttgggaaatgttaacaacgacacttgataaaaaatttaaaatg 107  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  41072577 ttggtgatgtggacacaagttgatagccatatcccaaattatggaatctaataatgtttgggaaatgttagcaaggacacttgataaaaaatttaaaatg 41072478  T
Q  108 gaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcatta 207  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  41072477 aaaactttactttagaaattgtgcattcaacacattgaaacaacaaaaagtaattttttcaacataaaatttatcaatcatttgtagttttgaatcatta 41072378  T
Q  208 ataagtgacattaatgttggcatgaaccataatgtttttgctaaagataataggaaggtggacttacaagaaagtcacatgcagaatttga 298  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41072377 ataagtgacattaatgttggcatgaaccataatgtttttgccaaagataataggaaggtggacttacaagaaagtcacatgcaaaatttga 41072287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 23223300 - 23223406
Alignment:
Q  107 ggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcatt 206  Q
    ||||||||||  ||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||||||||||| |||||||| ||||||    
T  23223300 ggaaactttatcttaaaaattgtgcattcaacacattgaaacaacaaaaaataatttttt-aacataaaatccatcaatcatttatagttttggatcatt 23223398  T
Q  207 aataagtg 214  Q
    || |||||    
T  23223399 aacaagtg 23223406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 23237380 - 23237486
Alignment:
Q  107 ggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcatt 206  Q
    ||||||||||  ||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||||||||||| |||||||| ||||||    
T  23237380 ggaaactttatcttaaaaattgtgcattcaacacattgaaacaacaaaaaataatttttt-aacataaaatccatcaatcatttatagttttggatcatt 23237478  T
Q  207 aataagtg 214  Q
    || |||||    
T  23237479 aacaagtg 23237486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 28084824 - 28084908
Alignment:
Q  118 tttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaat 202  Q
    ||||||||||||||||| || ||||| |||||| ||||| |||||||||| || || |||| |||||| |||| || ||||||||    
T  28084824 tttagaaattgtgcatttaagacattaaaacaacaaaaaataattttttctacctaaaatttatcaattatttatatttttgaat 28084908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 12838009 - 12837895
Alignment:
Q  100 ttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttg 199  Q
    |||||||||||||||||| ||||||||| || | |||| ||||||||||| ||||||| || ||  || ||||| |||| ||||||  ||| || | |||    
T  12838009 ttaaaatggaaactttacattagaaattatgtaatcaagacattgaaacattaaaaagcaacttaatctacataaaatttatcaattgtttctattcttg 12837910  T
Q  200 aatcattaataagtg 214  Q
    |||| |||| |||||    
T  12837909 aatccttaacaagtg 12837895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 40144964 - 40145017
Alignment:
Q  113 tttactttagaaattgtgcattcaacacattgaaacaataaaaagtaatttttt 166  Q
    ||||| |||||||||||| |||||||  |||||||||||||||||||| |||||    
T  40144964 tttaccttagaaattgtgaattcaaccaattgaaacaataaaaagtaaattttt 40145017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 7399822 - 7399910
Alignment:
Q  85 cacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacata 173  Q
    |||||||||| || |||||| |||||  ||||  || ||| ||||  |||||||||||||||||| |||||||||| ||||| ||||||    
T  7399822 cacttgataagaagtttaaagtggaaggtttatcttggaagttgtttattcaacacattgaaacattaaaaagtaacttttttaacata 7399910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 44933141 - 44933042
Alignment:
Q  102 aaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaa 201  Q
    ||||| |||||||||  ||| ||||| |||||| ||||||||||||||| ||||||||| |||| | ||  | ||| |||||||||||| || |||||||    
T  44933141 aaaattgaaactttatcttaaaaattatgcatttaacacattgaaacaacaaaaagtaacttttcctaccca-aatccatcaatcatttctaattttgaa 44933043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 30833456 - 30833493
Alignment:
Q  123 aaattgtgcattcaacacattgaaacaataaaaagtaa 160  Q
    ||||||||||||||||||||||||| || |||||||||    
T  30833456 aaattgtgcattcaacacattgaaataacaaaaagtaa 30833493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 43921200 - 43921091
Alignment:
Q  99 tttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagtttt 198  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||| |||||||| |||||||    
T  43921200 tttaaaatgggaactttaccttggaaattgtgcattcaacacattgaaagaacaaaaagtaactttttcaacataaaattcatgaatcatttctagtttt 43921101  T
Q  199 gaatcattaa 208  Q
    ||||| ||||    
T  43921100 gaatccttaa 43921091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 34701315 - 34701201
Alignment:
Q  100 ttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttg 199  Q
    |||||||||||||||||| || |||||||| ||||||||| ||| |||||| |||| |||| |||||| ||||| || ||||||||||||| || |||||    
T  34701315 ttaaaatggaaactttaccttggaaattgtacattcaacaaattaaaacaacaaaaggtaactttttctacataaaactcatcaatcatttctaattttg 34701216  T
Q  200 aatcattaataagtg 214  Q
    |||| |||| |||||    
T  34701215 aatccttaacaagtg 34701201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 56128672 - 56128592
Alignment:
Q  123 aaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatc 203  Q
    |||||||||||||||||||||||||||| ||||||||| |||||| || || | ||||| |||||||| || |||||||||    
T  56128672 aaattgtgcattcaacacattgaaacaacaaaaagtaactttttctacctaaatttcataaatcatttctatttttgaatc 56128592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 27915206 - 27915331
Alignment:
Q  83 gacacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatc 182  Q
    |||||||||||| |||||||||||||||  ||||  ||| || ||||| |||||||||||| ||| | |||||| ||| ||||| |||||| |||| |||    
T  27915206 gacacttgataagaaatttaaaatggaaggtttatcttaaaagttgtgtattcaacacattcaaatattaaaaactaacttttttaacataaaatttatc 27915305  T
Q  183 aatcatttgtagttttgaatcattaa 208  Q
    ||| |||| |  ||||||||| ||||    
T  27915306 aattatttctctttttgaatccttaa 27915331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 25099017 - 25098886
Alignment:
Q  83 gacacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatc 182  Q
    |||||||| ||| || |||||| | |||| ||||  ||| || ||||| ||| || | |||| ||||| |||||||||||||||| || || | ||||||    
T  25099017 gacacttgttaagaagtttaaattagaaattttatcttaaaatttgtgtatttaatatattgtaacaacaaaaagtaattttttctacttaaatttcatc 25098918  T
Q  183 aatcatttgtagttttgaatcattaataagtg 214  Q
    |||||||| || ||||||||| |||| |||||    
T  25098917 aatcatttctaattttgaatccttaacaagtg 25098886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 39102117 - 39102035
Alignment:
Q  85 cacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttc 167  Q
    |||||| ||| || ||||||||| |||| ||| ||||||||||||||||||| |||| | |||||| ||||| ||| ||||||    
T  39102117 cacttgttaagaagtttaaaatgaaaacattattttagaaattgtgcattcagcacactaaaacaacaaaaaataactttttc 39102035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 48051717 - 48051791
Alignment:
Q  139 acattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagt 213  Q
    |||||||||||| ||||||||| |||||| ||||| |||| |||||| |||| || ||||||||| |||| ||||    
T  48051717 acattgaaacaacaaaaagtaactttttctacataaaatttatcaattatttctatttttgaatccttaacaagt 48051791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 31917636 - 31917727
Alignment:
Q  123 aaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    |||||||||||| || |||||||||||| ||||| | |||||||| ||||| |||| || ||| || | || ||||||||| |||| |||||    
T  31917636 aaattgtgcatttaaaacattgaaacaacaaaaaattattttttctacataaaatttataaattatatttatttttgaatccttaacaagtg 31917727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 38547539 - 38547481
Alignment:
Q  132 attcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcattt 190  Q
    |||||||||||||||| | ||||||||| |||||| |||||| |||| |||||| ||||    
T  38547539 attcaacacattgaaatattaaaaagtagtttttttaacataaaatttatcaattattt 38547481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 46 - 153
Alignment:
Q  107 ggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcatt 206  Q
    ||||||||||  ||| |||||||||||||||||||||||||||| |||||||| |||||| |||||| |||||||||||||||| |||||||| ||||||    
T  46 ggaaactttatcttaaaaattgtgcattcaacacattgaaacaacaaaaagtattttttttaacataaaattcatcaatcatttatagttttggatcatt 145  T
Q  207 aataagtg 214  Q
    || |||||    
T  146 aacaagtg 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 43827213 - 43827323
Alignment:
Q  99 tttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaa-gtaattttttcaacatagaattcatcaatcatttgtagttt 197  Q
    ||||| ||||||||||||  ||||||||| | |||| |||||||| |||||| ||||| |||| |||||||||||| |||||||||||||||| ||||||    
T  43827213 tttaatatggaaactttaacttagaaattatacattgaacacattaaaacaacaaaaaagtaactttttcaacataaaattcatcaatcatttctagttt 43827312  T
Q  198 tgaatcattaa 208  Q
    |||||||||||    
T  43827313 tgaatcattaa 43827323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 15985277 - 15985337
Alignment:
Q  130 gcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcattt 190  Q
    |||||||||||||||||| | |||||||||||||||| |||||| |||| |||||| ||||    
T  15985277 gcattcaacacattgaaatattaaaaagtaatttttttaacataaaatttatcaattattt 15985337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 31596210 - 31596336
Alignment:
Q  66 tgggaaatgttaacaacgacacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaa-------acaataaaaagt 158  Q
    |||||| || |||||| | |||||||||| || |||||| ||| || ||||| || | ||||||| |||||||||||||||       ||| ||||||||    
T  31596210 tgggaattgctaacaagggcacttgataagaagtttaaagtggcaattttaccttgggaattgtgtattcaacacattgaattttgaaacattaaaaagt 31596309  T
Q  159 aattttttcaacatagaattcatcaat 185  Q
    ||||||||||||||| |||| ||||||    
T  31596310 aattttttcaacataaaatttatcaat 31596336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 31752812 - 31752705
Alignment:
Q  83 gacacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatc 182  Q
    |||||||||||| ||||||||| |  ||  |||| ||| ||| ||||| |||||||||||| ||| | |||||||||  |||||||||||| |||| |||    
T  31752812 gacacttgataagaaatttaaagtaaaaggtttattttggaagttgtgtattcaacacattaaaatattaaaaagtacatttttcaacataaaatttatc 31752713  T
Q  183 aatcattt 190  Q
    ||| ||||    
T  31752712 aattattt 31752705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 43767320 - 43767379
Alignment:
Q  126 ttgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaat 185  Q
    |||||||||||||||||| |||||  |||||||||||||||| ||||| |||| ||||||    
T  43767320 ttgtgcattcaacacattaaaacatcaaaaagtaattttttctacataaaatttatcaat 43767379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 50531585 - 50531506
Alignment:
Q  87 cttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaatttttt 166  Q
    ||||||||||||||||||||| ||| |||   ||| || ||||| |||||||| ||||||||| ||||||||| ||||||    
T  50531585 cttgataaaaaatttaaaatgaaaattttgtgttaaaatttgtgtattcaacaaattgaaacattaaaaagtagtttttt 50531506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 23512821 - 23512731
Alignment:
Q  124 aattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    |||||||||||||| |||||||||||| |||||||||  |||||  |||| ||||  ||||| |||| || ||| ||||| |||| |||||    
T  23512821 aattgtgcattcaagacattgaaacaacaaaaagtaacattttctccataaaatttgtcaattatttctattttggaatctttaacaagtg 23512731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 37075446 - 37075503
Alignment:
Q  126 ttgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatca 183  Q
    |||||||||| | |||||||||||| ||||| |||||||||| ||||| |||| ||||    
T  37075446 ttgtgcattctagacattgaaacaacaaaaattaattttttctacataaaattaatca 37075503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 41291525 - 41291480
Alignment:
Q  122 gaaattgtgcattcaacacattgaaacaataaaaagtaattttttc 167  Q
    |||||| |||||||||| |||||||| || ||||||||||||||||    
T  41291525 gaaattatgcattcaacgcattgaaataaaaaaaagtaattttttc 41291480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 29111006 - 29110966
Alignment:
Q  126 ttgtgcattcaacacattgaaacaataaaaagtaatttttt 166  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  29111006 ttgtgaattcaacacattgaaataataaaaagtaaattttt 29110966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 30070423 - 30070471
Alignment:
Q  137 acacattgaaacaataaaaagtaattttttcaacatagaattcatcaat 185  Q
    |||||||||| || |||||||||||||||| |||||| |||| ||||||    
T  30070423 acacattgaatcattaaaaagtaatttttttaacataaaatttatcaat 30070471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 44344802 - 44344738
Alignment:
Q  126 ttgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcattt 190  Q
    ||||| |||||||| ||| ||| | |||||| |||||||||||||||| |||| |||||| ||||    
T  44344802 ttgtgtattcaacatattaaaatattaaaaaataattttttcaacatataatttatcaattattt 44344738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 52685179 - 52685131
Alignment:
Q  119 ttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttc 167  Q
    |||||||||||||||||||  ||| ||||| ||||||||||| ||||||    
T  52685179 ttagaaattgtgcattcaatgcatagaaacgataaaaagtaaatttttc 52685131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 38221746 - 38221630
Alignment:
Q  92 taaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttg 191  Q
    |||||||||||||||  ||| |||| |||| |||||||| |||||||||||| |||||||| ||||||||| ||||||  || ||||||||||||||||     
T  38221746 taaaaaatttaaaataaaaattttattttaaaaattgtgtattcaacacattaaaacaatataaagtaattctttcaaagtaaaattcatcaatcatttt 38221647  T
Q  192 tagttttgaatcattaa 208  Q
    |  ||||||||||||||    
T  38221646 ttattttgaatcattaa 38221630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 2603438 - 2603348
Alignment:
Q  123 aaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    ||||| |||||||||||||  ||||||| |||||||||||||||  ||||| |||||||||||||||| || ||||||| | |||| |||||    
T  2603438 aaattatgcattcaacacagggaaacaacaaaaagtaatttttt-tacataaaattcatcaatcatttctaattttgaacccttaacaagtg 2603348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 11766593 - 11766526
Alignment:
Q  99 tttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaatttttt 166  Q
    |||||| |||||| ||||| ||  ||||||||||||||| |||||||||||| |||||||||||||||    
T  11766593 tttaaagtggaaattttaccttgaaaattgtgcattcaagacattgaaacaacaaaaagtaatttttt 11766526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 32203129 - 32203015
Alignment:
Q  99 tttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagtttt 198  Q
    ||||||||||||||||||| || ||||||||||||| || |||||||||||| ||||| |||  ||||| || |  | || ||||||||||| || ||||    
T  32203129 tttaaaatggaaactttaccttggaaattgtgcattgaatacattgaaacaacaaaaaataa-cttttctaccttaatttgatcaatcatttctaatttt 32203031  T
Q  199 gaatcattaataagtg 214  Q
    ||||| |||| |||||    
T  32203030 gaatccttaacaagtg 32203015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 42704177 - 42704245
Alignment:
Q  141 attgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaat 209  Q
    ||||||| |||||||||||| |||||| | ||| |||||||||||||||| || ||||||||| |||||    
T  42704177 attgaaataataaaaagtaactttttccatatataattcatcaatcatttttaattttgaatccttaat 42704245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 5984186 - 5984285
Alignment:
Q  106 tggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcat 205  Q
    |||||| |||| |||||||||| |||||||||||||||||||||| ||||| | | |||||| ||||| |||| |||||| |||| || ||||||||| |    
T  5984186 tggaaattttattttagaaatt-tgcattcaacacattgaaacaacaaaaa-ttactttttctacataaaatttatcaattattt-taattttgaatcct 5984282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 7859240 - 7859154
Alignment:
Q  87 cttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacata 173  Q
    ||||||||||| |||||| ||| || ||||  ||  || ||||| |||||||||||| ||||| |||||||||| ||||||||||||    
T  7859240 cttgataaaaagtttaaagtggtaattttatcttttaagttgtgtattcaacacattaaaacattaaaaagtaactttttcaacata 7859154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 5221088 - 5221035
Alignment:
Q  113 tttactttagaaattgtgcattcaacacattgaaacaataaaaagtaatttttt 166  Q
    |||| |||| |||||||||||| || |||||||||||||||||||||| |||||    
T  5221088 tttattttataaattgtgcatttaagacattgaaacaataaaaagtaacttttt 5221035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 13244659 - 13244788
Alignment:
Q  84 acacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatca 183  Q
    ||||||||||| |||||| |||| |||| |||| ||||||| ||||| |||||| | ||||||| |  |||||  |||||| || ||||| || | ||||    
T  13244659 acacttgataagaaattttaaatagaaattttattttagaatttgtgtattcaatatattgaaatatcaaaaaacaattttgtctacataaaagttatca 13244758  T
Q  184 atcatttgtagttttgaatcattaataagt 213  Q
    ||  ||| || |||||||||||||| ||||    
T  13244759 attgtttctatttttgaatcattaacaagt 13244788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 5959744 - 5959811
Alignment:
Q  99 tttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttc 167  Q
    ||||||||| |||||||| |||| ||| ||||||||||| | |||||||||| ||||| ||||||||||    
T  5959744 tttaaaatgaaaactttattttaaaaagtgtgcattcaagatattgaaacaacaaaaa-taattttttc 5959811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 36178477 - 36178539
Alignment:
Q  123 aaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaat 185  Q
    ||||||||||||||| |||||||||||| ||||| || |||||||  |||| |||| ||||||    
T  36178477 aaattgtgcattcaagacattgaaacaacaaaaaatatttttttctgcataaaatttatcaat 36178539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 5948663 - 5948742
Alignment:
Q  109 aaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcattt 190  Q
    |||||||| |||| |||||||  ||||||||||||| ||||| ||||| |||||||||| ||||| || | |||||||||||    
T  5948663 aaactttattttaaaaattgtatattcaacacattg-aacaacaaaaa-taattttttctacataaaacttatcaatcattt 5948742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 35631903 - 35631830
Alignment:
Q  83 gacacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaa 156  Q
    |||| ||| ||| |||||||||||| ||||||||  || |||||||||||||||||| ||| ||| || |||||    
T  35631903 gacatttgttaagaaatttaaaatgaaaactttatattggaaattgtgcattcaacaaattaaaataaaaaaaa 35631830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 41679634 - 41679726
Alignment:
Q  123 aaattgtgcattcaacacattgaaacaataaaaagtaat-tttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    ||||||| |||||||  ||||||||| | |||||||||| |||||   |||| | |||||||||||||| || |||| ||||||||| |||||    
T  41679634 aaattgtacattcaagccattgaaaccacaaaaagtaatatttttttccataaatttcatcaatcatttctaattttaaatcattaacaagtg 41679726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 9049976 - 9050081
Alignment:
Q  85 cacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaa 184  Q
    ||||||||||||| |||||||| |||| |||| |||  || ||||| |||||||||||||||| | |||||||||||||||| |||||| |||| |||||    
T  9049976 cacttgataaaaagtttaaaatagaaagtttattttgaaagttgtgtattcaacacattgaaatattaaaaagtaattttttaaacataaaatttatcaa 9050075  T
Q  185 tcattt 190  Q
    | ||||    
T  9050076 ttattt 9050081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 29301823 - 29301714
Alignment:
Q  99 tttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagtttt 198  Q
    ||||||||||| |||||   || |||||||||||||||||| |||||||||| |||||||||  |||||  | || | |||||||||||||| || ||||    
T  29301823 tttaaaatggagactttgtcttggaaattgtgcattcaacatattgaaacaacaaaaagtaacattttctgcctaaacttcatcaatcatttttaatttt 29301724  T
Q  199 gaatcattaa 208  Q
    ||||| ||||    
T  29301723 gaatccttaa 29301714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 6661784 - 6661901
Alignment:
Q  101 taaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaat--catttgtagtttt 198  Q
    |||||| |||||||||  ||  |||||||| |||||||||||||||||||||||| |||| ||||| ||| || | |||||||||  ||||| || ||||    
T  6661784 taaaatagaaactttatcttgaaaattgtgaattcaacacattgaaacaataaaacgtaaatttttaaacctaaatttcatcaatcgcatttctaatttt 6661883  T
Q  199 gaatcattaataagtgac 216  Q
    ||||  |||| |||||||    
T  6661884 gaattcttaacaagtgac 6661901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 2248742 - 2248788
Alignment:
Q  126 ttgtgcattcaacacattgaaacaataaaaagtaattttttcaacat 172  Q
    ||||| |||||||||||||||||| |||||||||| |||||||||||    
T  2248742 ttgtgtattcaacacattgaaacattaaaaagtaactttttcaacat 2248788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 342938 - 343018
Alignment:
Q  86 acttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaatttttt 166  Q
    |||||||||||| ||||||||| ||| |||  ||| ||| || || |||||||||||||||||| |||||| ||| |||||    
T  342938 acttgataaaaagtttaaaatgaaaattttgttttggaatttatgtattcaacacattgaaacattaaaaaataacttttt 343018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 7703001 - 7703112
Alignment:
Q  97 aatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaa-ttttttcaacatagaattcatcaatcatttgtagt 195  Q
    |||||||| |||||| | ||  ||| ||||||||||||||| | ||| |||||||||||||||| ||||||  ||||| |||| |||||| |||| || |    
T  7703001 aatttaaagtggaaattatatcttaaaaattgtgcattcaa-atatttaaacaataaaaagtaacttttttatacataaaatttatcaattatttttatt 7703099  T
Q  196 tttgaatcattaa 208  Q
    |||||||| ||||    
T  7703100 tttgaatctttaa 7703112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 31597603 - 31597556
Alignment:
Q  126 ttgtgcattcaacacattgaaacaataaaaagtaattttttcaacata 173  Q
    |||||||||||||||||| ||||| |||||||||| |||||| |||||    
T  31597603 ttgtgcattcaacacattaaaacattaaaaagtaactttttctacata 31597556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 29129391 - 29129298
Alignment:
Q  121 agaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    ||||||||| |||| |  |||||||||||| ||||||||||| |||| |  || |||| |||||| |||| || |||| |||| ||||||||||    
T  29129391 agaaattgtacatttaggacattgaaacaacaaaaagtaattctttctatttaaaatttatcaattatttctatttttaaatccttaataagtg 29129298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 1364391 - 1364336
Alignment:
Q  99 tttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaa 155  Q
    ||||||||| ||||||||  ||||||||||| ||||||| |||||| ||||||||||    
T  1364391 tttaaaatgaaaactttatcttagaaattgtacattcaatacattg-aacaataaaa 1364336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 37599715 - 37599623
Alignment:
Q  122 gaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||| || || | |||||||||||||| ||||||| |||| |||| |||||    
T  37599715 gaaattgtgcattcaacacattgaaacagcaaaaagtaactttttctacctaaatttcatcaatcatttctagttttaaatctttaacaagtg 37599623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 44698020 - 44698120
Alignment:
Q  85 cacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaa 184  Q
    |||||||||| || |||||| |||||  ||||  || ||| ||||| |||||||| ||||||||| |||||||||| |||||||||||| |||| |||||    
T  44698020 cacttgataataagtttaaagtggaagttttatcttggaagttgtgtattcaacatattgaaacattaaaaagtaactttttcaacataaaatttatcaa 44698119  T
Q  185 t 185  Q
    |    
T  44698120 t 44698120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 27262860 - 27262777
Alignment:
Q  90 gataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacata 173  Q
    ||||| || ||||||||||||| |||   |||||| ||||| |||||||||||| ||||| ||||||||||||||||| |||||    
T  27262860 gataagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttttctacata 27262777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 31963113 - 31963039
Alignment:
Q  85 cacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagta 159  Q
    |||||||||| || ||||||||||||| |||  ||| ||| ||||| |||||||||||||||||| |||||||||    
T  31963113 cacttgataagaagtttaaaatggaaattttgttttggaatttgtgtattcaacacattgaaacattaaaaagta 31963039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 42592801 - 42592699
Alignment:
Q  88 ttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatca 187  Q
    ||||||| || |||||| |||||  ||||  || ||| ||||| ||||||| |||||||||  ||||||||||||||||||||||| |||| |||||| |    
T  42592801 ttgataagaagtttaaagtggaaggtttatcttggaagttgtgtattcaacccattgaaacgttaaaaagtaattttttcaacataaaatttatcaatta 42592702  T
Q  188 ttt 190  Q
    |||    
T  42592701 ttt 42592699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 39527023 - 39527115
Alignment:
Q  122 gaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    ||||||||||||||||| ||||||||||| |||||| || |||||| ||||| |||| ||| || ||||  | ||||||||| |||| |||||    
T  39527023 gaaattgtgcattcaacccattgaaacaacaaaaaggaactttttctacataaaatttatcgattatttccaattttgaatccttaacaagtg 39527115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 44529244 - 44529346
Alignment:
Q  83 gacacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatc 182  Q
    |||| ||||||| || |||||| |||||  ||||  ||| || ||||| |||||||| ||| ||||| |||||||||| |||||||||||| |||| |||    
T  44529244 gacatttgataagaagtttaaagtggaagttttatcttaaaagttgtgtattcaacatattaaaacattaaaaagtaactttttcaacataaaatttatc 44529343  T
Q  183 aat 185  Q
    |||    
T  44529344 aat 44529346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 48375424 - 48375498
Alignment:
Q  86 acttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaa 160  Q
    ||||| ||| || ||||||||| |||| |||  || |||||||||||||||||| |||||||||| |||||||||    
T  48375424 acttgttaagaagtttaaaatgaaaaccttatattggaaattgtgcattcaacaaattgaaacaacaaaaagtaa 48375498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 23527240 - 23527314
Alignment:
Q  92 taaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaatttttt 166  Q
    |||||| ||||||||||||| ||||  ||  ||||||| ||||||| | ||||||| || |||||||||||||||    
T  23527240 taaaaagtttaaaatggaaattttatcttgaaaattgtacattcaatatattgaaataacaaaaagtaatttttt 23527314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 34620697 - 34620612
Alignment:
Q  129 tgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    ||||||||||||||||||||   |||||||||||||||| ||||| || | | |||| |||| || ||| ||||| |||| |||||    
T  34620697 tgcattcaacacattgaaacttgaaaaagtaattttttctacataaaacttaccaattatttctattttagaatccttaacaagtg 34620612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 49483694 - 49483598
Alignment:
Q  86 acttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatca 183  Q
    |||||||||||| |||||| ||| || | || ||| ||| ||||  |||||||||||||||||| ||||||||||  | |||| |||| |||||||||    
T  49483694 acttgataaaaagtttaaagtggtaattctattttggaagttgtt-attcaacacattgaaacattaaaaagtaacatcttcatcataaaattcatca 49483598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 52469937 - 52469828
Alignment:
Q  94 aaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgta 193  Q
    |||| |||||||| |||| |||| |||  ||||||| |||||||| |||| |||||| |||| |||| | |||  || || | |||||||||||||| ||    
T  52469937 aaaattttaaaattgaaattttattttgaaaattgtacattcaacccattaaaacaacaaaatgtaactattttcacctaaatttcatcaatcatttcta 52469838  T
Q  194 gttttgaatc 203  Q
     |||||||||    
T  52469837 attttgaatc 52469828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 17897923 - 17897826
Alignment:
Q  92 taaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatt 189  Q
    |||||| ||||||||| ||| ||||  ||| ||||||||||||||||| ||| |||||| |||||||||||||||| || || | |||||||||||||    
T  17897923 taaaaagtttaaaatgcaaattttatcttaaaaattgtgcattcaacatattaaaacaacaaaaagtaattttttctacctaaatttcatcaatcatt 17897826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 40083483 - 40083579
Alignment:
Q  119 ttagaaattgtgcattcaacacattgaaacaataaaaagtaa-ttttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    |||||||||||| |||||| |||||||||||| ||||||||| ||||||||||| | |||| |||| | |||| || ||||||||| |||| |||||    
T  40083483 ttagaaattgtgtattcaatacattgaaacaacaaaaagtaatttttttcaacaaaaaatttatcagttatttctatttttgaatctttaacaagtg 40083579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 3954551 - 3954472
Alignment:
Q  87 cttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaatttttt 166  Q
    |||||||||||||||||||| |||| ||||  |||| | ||||| ||||||| |||||||| | ||||||||||||||||    
T  3954551 cttgataaaaaatttaaaatagaaattttatcttaggatttgtgaattcaactcattgaaatattaaaaagtaatttttt 3954472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 27494817 - 27494876
Alignment:
Q  96 aaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaa 155  Q
    ||||||||| || ||| |||| |||| ||||||| |||||||||||||||||||||||||    
T  27494817 aaatttaaattgaaaagtttattttaaaaattgttcattcaacacattgaaacaataaaa 27494876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 37426645 - 37426556
Alignment:
Q  83 gacacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacat 172  Q
    |||| ||||||| || |||||||| |||| |||||||| | | ||||| |||||||||||||||| |  |||||| ||||||||| ||||    
T  37426645 gacatttgataagaagtttaaaatagaaattttactttgggatttgtgtattcaacacattgaaatatcaaaaagcaattttttctacat 37426556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 1944770 - 1944811
Alignment:
Q  126 ttgtgcattcaacacattgaaacaataaaaagtaattttttc 167  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  1944770 ttgtgtattcaatacattgaaacattaaaaagtaattttttc 1944811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 8701035 - 8701116
Alignment:
Q  86 acttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttc 167  Q
    ||||| ||| || ||||||||  ||| ||||  ||| ||||| || |||||||||||| |||||||||||||||| ||||||    
T  8701035 acttgttaagaagtttaaaataaaaattttatcttaaaaattatgtattcaacacattaaaacaataaaaagtaaatttttc 8701116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 27587878 - 27587947
Alignment:
Q  145 aaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    ||||| |||||||||| ||||||||||||   || ||||||||||| ||||||| |||| |||| |||||    
T  27587878 aaacagtaaaaagtaactttttcaacataacttttatcaatcatttctagttttaaatctttaacaagtg 27587947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 41311724 - 41311809
Alignment:
Q  123 aaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaa 208  Q
    ||||| |||||| |||| |||||||   ||||||||||||||||| ||||| |||| || ||||||||  | ||||||||| ||||    
T  41311724 aaattatgcatttaacaaattgaaagtttaaaaagtaattttttctacataaaatttataaatcatttacatttttgaatccttaa 41311809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 752229 - 752185
Alignment:
Q  129 tgcattcaacacattgaaacaataaaaagtaattttttcaacata 173  Q
    ||||||||||||||||||||   |||||||||||||||| |||||    
T  752229 tgcattcaacacattgaaacttgaaaaagtaattttttctacata 752185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 12880121 - 12880197
Alignment:
Q  132 attcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaa 208  Q
    ||||||||||||||||   ||||||||||||||||| ||||| || | |||||| ||||  | ||||||||| ||||    
T  12880121 attcaacacattgaaattttaaaaagtaattttttctacataaaacttatcaattatttccatttttgaatccttaa 12880197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 844869 - 844769
Alignment:
Q  85 cacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaa 184  Q
    |||||||||| || |||||| ||| || | || ||| ||| ||||| |||||||||||||||||| ||||||||||  |||||| |||| ||||||||||    
T  844869 cacttgataagaagtttaaagtggtaattctattttggaagttgtgtattcaacacattgaaacattaaaaagtaacattttcatcataaaattcatcaa 844770  T
Q  185 t 185  Q
    |    
T  844769 t 844769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 9857801 - 9857881
Alignment:
Q  122 gaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatc 203  Q
    ||||||||||||| ||||||||||||||| |||||| || |||||| || || | |||||||||||||| || |||||||||    
T  9857801 gaaattgtgcatttaacacattgaaacaacaaaaag-aactttttctacctaaatttcatcaatcatttctaattttgaatc 9857881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 34362551 - 34362459
Alignment:
Q  120 tagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcatttgtagttttgaatcattaataagtg 214  Q
    |||||||| ||||||||| |||||||||||| ||||||| | |||||| ||||  |||| ||| ||||| | || |||||||||||||| |||||    
T  34362551 tagaaattatgcattcaatacattgaaacaacaaaaagtgactttttctacat--aatttatcgatcatatttaattttgaatcattaacaagtg 34362459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 8313689 - 8313636
Alignment:
Q  137 acacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcattt 190  Q
    ||||||||||||| |||||||||||||||| |||||| |||| |||||| ||||    
T  8313689 acacattgaaacattaaaaagtaatttttttaacataaaatttatcaattattt 8313636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 13203245 - 13203125
Alignment:
Q  88 ttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaat-aaaaagtaattttttcaacatagaattcatcaatc 186  Q
    |||||||||| ||||| || |||| |||| ||||||| ||||| |||||||||||||||||| | ||||| ||| |||||| ||||  || | ||||||     
T  13203245 ttgataaaaagtttaacatagaaattttattttagaatttgtg-attcaacacattgaaacattaaaaaaataactttttctacatgaaaattatcaatt 13203147  T
Q  187 atttgtagttttgaatcattaa 208  Q
    |||| || ||||||||| ||||    
T  13203146 atttttatttttgaatctttaa 13203125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 19608765 - 19608870
Alignment:
Q  85 cacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaa 184  Q
    ||||| |||| || || |||| ||||||||||  || ||| ||||  |||||||||||||||||| |||||||||| |||||| ||||| || | |||||    
T  19608765 cacttaataagaagttcaaaaaggaaactttatcttggaatttgtctattcaacacattgaaacattaaaaagtaactttttctacataaaaattatcaa 19608864  T
Q  185 tcattt 190  Q
    | ||||    
T  19608865 ttattt 19608870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 41174425 - 41174296
Alignment:
Q  85 cacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaa 184  Q
    |||||||||| ||  ||||| |||||  ||||  || ||| ||||||||| |||||||||||| | |||||||||| ||| |||||||| |||| | |||    
T  41174425 cacttgataagaagcttaaagtggaagttttatcttggaagttgtgcatttaacacattgaaatattaaaaagtaactttgtcaacataaaatttaacaa 41174326  T
Q  185 tcatttgtagttttgaatcattaataagtg 214  Q
    | |||| |  ||||||||| |||| |||||    
T  41174325 ttatttctctttttgaatccttaacaagtg 41174296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 33334202 - 33334116
Alignment:
Q  69 gaaatgttaacaacgacacttgataaaaaatttaaaatggaaactttactttagaaattgtgcattcaacacattgaaacaataaaa 155  Q
    |||||||||||||    ||||| ||||| ||||||| ||||||||||| |||   |||| ||||||||||| |||||||||| ||||    
T  33334202 gaaatgttaacaagtgtacttgctaaaagatttaaagtggaaactttattttgagaattatgcattcaacatattgaaacaacaaaa 33334116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 38328661 - 38328725
Alignment:
Q  126 ttgtgcattcaacacattgaaacaataaaaagtaattttttcaacatagaattcatcaatcattt 190  Q
    ||||| ||| || ||||||||||| |||||||||| ||||| |||||| ||||||| ||| ||||    
T  38328661 ttgtgtatttaatacattgaaacattaaaaagtaacttttttaacataaaattcatgaattattt 38328725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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