View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_11 (Length: 453)
Name: NF10233A_low_11
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Complemental strand, 14321448 - 14321030
Alignment:
| Q |
15 |
atggacatcgtgtgtcgcctttctaccggtggtaaaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgt |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14321448 |
atggacattgtgtgtcgcctttctaccggtggtacaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtcgtcgacttaaaggtttgt |
14321349 |
T |
|
| Q |
115 |
caagggtcgtgatgcggtgttgtatctagtttatggatggttggtggcaatttgttttaagatctaccgcctccgtgcttgtgggttggtgttttttata |
214 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |
|
|
| T |
14321348 |
caagggtcgcgatgcggtgttgtatctagtttctggatggttggtgacaatttgttttaagatctaccacctccgtgccggtgggttggtgtttttgata |
14321249 |
T |
|
| Q |
215 |
ttagtcgcggttgtttcaggtgccaccggcggactgtgatgagcatcgtctttcagttgtttgccctcttaatatatgtatctcatgattgattctgact |
314 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||| |
|
|
| T |
14321248 |
ttcgtcgcggttgtttaaggtgccaccggcggactatgatgagcatcgtctttcaattgtttgcccccttaatatatgtatctcatgatcgattttgact |
14321149 |
T |
|
| Q |
315 |
aatatgatatctcgttgttctctatgtttggcttggattgtggagttcgaaagagctgtttagcttgctgacatttgttccagggagttgatggtatgtg |
414 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14321148 |
aatatgatatctcgtcgttctctatgtttggcttggattgtgg-gttagaaagagccgtttagcttgttgacatttgttccagggagttgatggtatgtg |
14321050 |
T |
|
| Q |
415 |
gctccgcttccgtgttgatg |
434 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
14321049 |
ggtccgcttccgtgttgatg |
14321030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 41907708 - 41907831
Alignment:
| Q |
64 |
tcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgtgatgcggtgttgtatctagtttatggatggttggtggca |
163 |
Q |
| |
|
||||||| |||| ||||||||||||| |||| || |||| |||||||| ||||||| ||||| ||||||||||| ||||| | |||||||| |||| |
|
|
| T |
41907708 |
tcccaacattctccggttgtcctcttcgatgccgttgactgaaaggttttccaagggttgtgatatggtgttgtatccagtttctagatggttgctggcg |
41907807 |
T |
|
| Q |
164 |
atttgttttaagatctaccgcctc |
187 |
Q |
| |
|
|| |||||| |||| ||||||||| |
|
|
| T |
41907808 |
atctgttttcagatttaccgcctc |
41907831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University