View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_112 (Length: 294)
Name: NF10233A_low_112
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_112 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 33119852 - 33120118
Alignment:
| Q |
10 |
ttgcagctaaaaccaggggcatgcttaatccaagatgacgcgtctaaggagcgttgcgaatcacagcatagggattggtacacacaaggatgtccaagca |
109 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||||| ||||||||||| |||| |||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
33119852 |
ttgcagctaaaaccgggggcatacttaatccaagacgacgcatctaaggagcgctgcgcatcacaacacagagattggtacacacaaggatgtccaagca |
33119951 |
T |
|
| Q |
110 |
aaataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccc |
209 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
33119952 |
atataggatggttggcgatagttggtttagcagtctacataatattcttttcaccaggaatgggaacggttccatgggttatcaactctgaaatacaccc |
33120051 |
T |
|
| Q |
210 |
tttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33120052 |
tttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtt |
33120118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 276
Target Start/End: Original strand, 33116715 - 33116906
Alignment:
| Q |
85 |
tggtacacacaaggatgtccaagcaaaataggatggttggcaatagttggtttagcagtctacataatattcttttcaccaggaatgggaactgttccat |
184 |
Q |
| |
|
||||| |||||||||||||| |||||| | || ||| | ||| | |||| || || |||| ||| | ||||||||||| |||||||| |||||||||| |
|
|
| T |
33116715 |
tggtatacacaaggatgtcctagcaaattgggttggcttgcactgattggattggctctctatatactgttcttttcacctggaatggggactgttccat |
33116814 |
T |
|
| Q |
185 |
gggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacctcattgtt |
276 |
Q |
| |
|
|||| || |||||||| || ||||||||||||||||||||| | ||||||||||| || ||||||| || ||| |||| ||||| |||||| |
|
|
| T |
33116815 |
gggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggatctcaaaccttattgtt |
33116906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 269
Target Start/End: Complemental strand, 21492025 - 21491899
Alignment:
| Q |
143 |
tctacataatattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagc |
242 |
Q |
| |
|
||||||| |||||||| || || ||||||||||| |||||||||||| | ||||||||||| || || || ||||||||||||||||||||||||||||| |
|
|
| T |
21492025 |
tctacatcatattcttctcgcctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagc |
21491926 |
T |
|
| Q |
243 |
atcaacaacagtgtgggtctctaacct |
269 |
Q |
| |
|
|||||||||||||||||| || ||||| |
|
|
| T |
21491925 |
atcaacaacagtgtgggtttccaacct |
21491899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 21558576 - 21558479
Alignment:
| Q |
152 |
tattcttttcaccaggaatgggaactgttccatgggttatcaactctgaaatataccctttaaggtatagaggaatatgtggaggaatagcatcaaca |
249 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| | |||||||||||||| || ||||| || |||||||||||||||||||| || |||||| |
|
|
| T |
21558576 |
tattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatatccattaagatacagaggaatatgtggaggaatcgcgtcaaca |
21558479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University