View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10233A_low_12 (Length: 448)
Name: NF10233A_low_12
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10233A_low_12 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 23 - 431
Target Start/End: Original strand, 18149001 - 18149409
Alignment:
| Q |
23 |
caatgtgttgaaccacttcaacaagtcgacgtgtaagatatccagcatctgatgttcgtacagcagtatccacaacccctttacgggctccgtagcaaga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18149001 |
caatgtgttgaaccacttcaacaagtcgacgtgtaagatatccagcatctgatgttcgtacagcagtatccacaacccctttacgggctccgtagcaaga |
18149100 |
T |
|
| Q |
123 |
aattatatattctgttaaagacagtccttcccgtaaattgctttgaatgggtaaatcaatcatttgtccttgtggatctgacattaatcctctcattccg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18149101 |
aattatatattctgttaaagacagtccttcccgtaaattgctttgaatgggtaaatcaatcatttgtccttgtggatctgacattaatcctctcattccg |
18149200 |
T |
|
| Q |
223 |
actaattggtgcacttgagatgcatttcctctagctcctgaaaaagacattatatggactggattaaaggggtcagtcatcctaaaattaggattcattt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18149201 |
actaattggtgcacttgagatgcatttcctctagctcctgaaaaagacattatatggactggattaaaggggtcagtcatcctaaaattaggattcattt |
18149300 |
T |
|
| Q |
323 |
cttgtcgcaaatattcgcttgtagcataccatatttcaatggattggcgtaatttttctaccgcatgtacattcccataatgattatgtttttccaaaat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18149301 |
cttgtcgcaaatattcgcttgtagcataccatatttcaatggattggcgtaatttttctaccgcatgtacattcccataatgattatgtttttccaaaat |
18149400 |
T |
|
| Q |
423 |
agaactttg |
431 |
Q |
| |
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||||||||| |
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|
| T |
18149401 |
agaactttg |
18149409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Original strand, 50113281 - 50113318
Alignment:
| Q |
351 |
ccatatttcaatggattggcgtaatttttctaccgcat |
388 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||| |
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| T |
50113281 |
ccatatatcagtggattggcgtaatttttctaccgcat |
50113318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 23 - 431
Target Start/End: Complemental strand, 5583295 - 5582887
Alignment:
| Q |
23 |
caatgtgttgaaccacttcaacaagtcgacgtgtaagatatccagcatctgatgttcgtacagcagtatccacaacccctttacgggctccgtagcaaga |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5583295 |
caatgtgttgaaccacttcaacaagtcgacgtgtaagatatccagcatctgatgttcatacagcagtatccacaacccctttacgggctccgtagcaaga |
5583196 |
T |
|
| Q |
123 |
aattatatattctgttaaagacagtccttcccgtaaattgctttgaatgggtaaatcaatcatttgtccttgtggatctgacattaatcctctcattccg |
222 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5583195 |
aattatatattttgttaaagacagtccttcccgtaaattgctttgaatgggtaaatcaatcatttgtccttgtggatctgacattaatcctctcattccg |
5583096 |
T |
|
| Q |
223 |
actaattggtgcacttgagatgcatttcctctagctcctgaaaaagacattatatggactggattaaaggggtcagtcatcctaaaattaggattcattt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5583095 |
actaattggtgcacttgagatgcatttcctctagctcctgaaaaagacattatatggactggattaaaggggtcagtcatcctaaaattaggattcattt |
5582996 |
T |
|
| Q |
323 |
cttgtcgcaaatattcgcttgtagcataccatatttcaatggattggcgtaatttttctaccgcatgtacattcccataatgattatgtttttccaaaat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5582995 |
cttgtcgcaaatattcgcttgtagcataccatatttcaatggattggcgtaatttttctaccgcatgtacattcccataatgattatgtttttccaaaat |
5582896 |
T |
|
| Q |
423 |
agaactttg |
431 |
Q |
| |
|
||||||||| |
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|
| T |
5582895 |
agaactttg |
5582887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 28 - 431
Target Start/End: Complemental strand, 225941 - 225538
Alignment:
| Q |
28 |
tgttgaaccacttcaacaagtcgacgtgtaagatatccagcatctgatgttcgtacagcagtatccacaacccctttacgggctccgtagcaagaaatta |
127 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||||| ||||||| |
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| T |
225941 |
tgttgaactacttcaacaagtctacgtgtaagatatccagcatctgctgttcgtacagcagtatctacaacccctttgcgggctccatagcaggaaatta |
225842 |
T |
|
| Q |
128 |
tatattctgttaaagacagtccttcccgtaaattgctttgaatgggtaaatcaatcatttgtccttgtggatctgacattaatcctctcattccgactaa |
227 |
Q |
| |
|
|||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||| || ||||| |
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|
| T |
225841 |
tatattctgtcaaagaaagtccctcgcgtaaattgctttgaataggtaaatcaatcatttgtccttgagggtccgacattaatcctctcatacctactaa |
225742 |
T |
|
| Q |
228 |
ttggtgcacttgagatgcatttcctctagctcctgaaaaagacattatatggactggattaaaggggtcagtcatcctaaaattaggattcatttcttgt |
327 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||| || |||||||||| | || || || |||| |||||| | ||||||||||||| |
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|
| T |
225741 |
ttggtgtacttgagatgcatttcctctggctcctgaaaaagacattagatagactggattagaaggatccgttatccgaaaatttgaattcatttcttgt |
225642 |
T |
|
| Q |
328 |
cgcaaatattcgcttgtagcataccatatttcaatggattggcgtaatttttctaccgcatgtacattcccataatgattatgtttttccaaaatagaac |
427 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225641 |
ttcaaatattcacttgtcgcataccatatctcaacagattggcgtaatttttctaccgcatgtacattcccataatgattatgtttttccaaaatagaac |
225542 |
T |
|
| Q |
428 |
tttg |
431 |
Q |
| |
|
|||| |
|
|
| T |
225541 |
tttg |
225538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 234 - 421
Target Start/End: Original strand, 19880 - 20067
Alignment:
| Q |
234 |
cacttgagatgcatttcctctagctcctgaaaaagacattatatggactggattaaaggggtcagtcatcctaaaattaggattcatttcttgtcgcaaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
19880 |
cacttgagatgcatttcctctagctcctgaaaaagacattatatggactggattaaaggggacagtcatcctaaaattaggattcatttcttgtcgcaaa |
19979 |
T |
|
| Q |
334 |
tattcgcttgtagcataccatatttcaatggattggcgtaatttttctaccgcatgtacattcccataatgattatgtttttccaaaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19980 |
tattcgcttgtagcataccatatttcaaagaattggcgtaatttttctaccgcatgtacattcccataatgattatgtttttccaaaa |
20067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 33992867 - 33992935
Alignment:
| Q |
33 |
aaccacttcaacaagtcgacgtgtaagatatccagcatctgatgttcgtacagcagtatccacaacccc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33992867 |
aaccacttcaacaagtcgacgtgtaagatatccagcatctgatgttcgtacagcagtatccacaacccc |
33992935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 8967064 - 8967034
Alignment:
| Q |
23 |
caatgtgttgaaccacttcaacaagtcgacg |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8967064 |
caatgtgttgaaccacttcaacaagtcgacg |
8967034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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