View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10233A_low_120 (Length: 290)

Name: NF10233A_low_120
Description: NF10233A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10233A_low_120
NF10233A_low_120
[»] chr5 (1 HSPs)
chr5 (47-290)||(5254449-5254692)
[»] chr7 (8 HSPs)
chr7 (47-273)||(4469632-4469857)
chr7 (110-273)||(38691017-38691178)
chr7 (202-273)||(39669444-39669515)
chr7 (187-272)||(4468495-4468580)
chr7 (110-180)||(39669515-39669585)
chr7 (187-252)||(39666817-39666882)
chr7 (187-253)||(4474007-4474073)
chr7 (51-91)||(4468349-4468389)
[»] chr8 (4 HSPs)
chr8 (47-273)||(6647847-6648073)
chr8 (187-253)||(41989978-41990044)
chr8 (189-253)||(18476601-18476665)
chr8 (187-253)||(6645272-6645338)
[»] chr1 (4 HSPs)
chr1 (47-273)||(20133790-20134015)
chr1 (202-273)||(24523860-24523931)
chr1 (47-180)||(24523725-24523860)
chr1 (187-253)||(24525755-24525821)
[»] chr2 (2 HSPs)
chr2 (47-273)||(13859576-13859802)
chr2 (187-253)||(13856990-13857056)
[»] chr6 (3 HSPs)
chr6 (150-270)||(11144219-11144339)
chr6 (47-96)||(11144109-11144158)
chr6 (187-253)||(11144981-11145047)
[»] chr3 (2 HSPs)
chr3 (150-273)||(7551351-7551472)
chr3 (47-96)||(7551529-7551578)
[»] scaffold0136 (2 HSPs)
scaffold0136 (202-273)||(40879-40950)
scaffold0136 (47-180)||(40747-40879)
[»] chr4 (1 HSPs)
chr4 (50-96)||(3993331-3993377)
[»] scaffold0416 (1 HSPs)
scaffold0416 (47-96)||(4371-4420)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 47 - 290
Target Start/End: Complemental strand, 5254692 - 5254449
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatgnnnnnnnnnnnnngttaactatgtttttctaaagaaacttttgctnnnnn 146  Q
    ||||||||||||||||||||||||  |||||||||| |||||||| ||||             ||||||||||||||||||||||||||||||||         
T  5254692 agtgctattttctctatttatttggtaatataaacaacgatccccatatgtttttttgtttttgttaactatgtttttctaaagaaacttttgctaaaaa 5254593  T
Q  147 nntttctcattaaatttgtgtcaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgcca 246  Q
      |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5254592 aatttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactctgtctacatatgtgccactttatgcca 5254493  T
Q  247 aactaataatctctcaactctctatattagatcttttaacatga 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5254492 aactaataatctctcaactctctatattagatcttttaacatga 5254449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 4469632 - 4469857
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatgnnnnnnnnnnnnngttaactatgtttttctaaagaaacttttgctnnnnn 146  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||| ||||             |||||||||||||||||||| |||||||||||         
T  4469632 agtgctattttctctatttatttggcaatataaacaccgaaccccatatgattttttgtttttgttaactatgtttttctaaacaaacttttgctaaaaa 4469731  T
Q  147 nntttctcattaaatttgtgtcaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgcca 246  Q
      || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4469732 aatt-ctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactatgtctacatatgtgccactttatgcca 4469830  T
Q  247 aactaataatctctcaactctctatat 273  Q
    ||||||| |||||||||||||||||||    
T  4469831 aactaatcatctctcaactctctatat 4469857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 273
Target Start/End: Original strand, 38691017 - 38691178
Alignment:
Q  110 gttaactatgtttttctaaagaaacttttgctnnnnnnntttctcattaaatttgtgtcaccaaagaaaagaaaaaacctcatctaacgtttgtctttgg 209  Q
    |||||||||||||||||||| ||||||||| |        ||||||||||||||||| || ||||||||| |||||  ||||||||||||||||||||||    
T  38691017 gttaactatgtttttctaaacaaacttttgttgaaaaaaattctcattaaatttgtgccaacaaagaaaaaaaaaa--ctcatctaacgtttgtctttgg 38691114  T
Q  210 taactaactttgtctacatatgtgccactttatgccaaactaataatctctcaactctctatat 273  Q
    ||| ||||| ||||||||| |||| ||||||||| ||||| ||| |||||||||||||||||||    
T  38691115 taattaactctgtctacatctgtgtcactttatgtcaaacaaatcatctctcaactctctatat 38691178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 39669515 - 39669444
Alignment:
Q  202 gtctttggtaactaactttgtctacatatgtgccactttatgccaaactaataatctctcaactctctatat 273  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |||| |||||||||    
T  39669515 gtctttggtaactaactctgtctacatatgtgccactttatgtcaaactaatcatctttcaaatctctatat 39669444  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 4468495 - 4468580
Alignment:
Q  187 cctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaataatctctcaactctctata 272  Q
    |||||||||  |||||| ||| |||||||  | ||||||||| ||||||||||||||||||| ||||  |||||||| ||||||||    
T  4468495 cctcatctattgtttgttttttgtaactacttctgtctacatttgtgccactttatgccaaagtaatcctctctcaaatctctata 4468580  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 39669585 - 39669515
Alignment:
Q  110 gttaactatgtttttctaaagaaacttttgctnnnnnnntttctcattaaatttgtgtcaccaaagaaaag 180  Q
    |||||||||||||||||||| |||||||||||        ||||||||||||||||| |||||||||||||    
T  39669585 gttaactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaag 39669515  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 39666882 - 39666817
Alignment:
Q  187 cctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaa 252  Q
    |||||||||  |||||| |||| ||| ||||||| |||| ||||||| ||||||||||||||||||    
T  39666882 cctcatctattgtttgtttttgttaagtaactttttctagatatgtggcactttatgccaaactaa 39666817  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 4474007 - 4474073
Alignment:
Q  187 cctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaat 253  Q
    |||||||||  |||||| |||| ||| |||||||  ||| ||||||| |||||||||||||||||||    
T  4474007 cctcatctattgtttgtttttgttaagtaacttttcctagatatgtggcactttatgccaaactaat 4474073  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 4468349 - 4468389
Alignment:
Q  51 ctattttctctatttatttgtcaatataaacagcgatcccc 91  Q
    |||||||||||||||||||| ||||||||||| | ||||||    
T  4468349 ctattttctctatttatttggcaatataaacatcaatcccc 4468389  T

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Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 6648073 - 6647847
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatgnnnnnnnnnnnnngttaactatgtttttctaaagaaacttttgctnnnnn 146  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| |||              |||||||||||||||||||| |||||||||||         
T  6648073 agtgctattttctctatttatttggcaatataaacaccgatccccatattttttttagtttttgttaactatgtttttctaaacaaacttttgctaaaaa 6647974  T
Q  147 nntttctcattaaatttgtgtcaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgcca 246  Q
       ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6647973 aaattctcattaaatttgtgccaccaaagaaaagaaaaaacatcatctaacgtttgtctttggtaactaactctgtctacatatgtgccactttatgcca 6647874  T
Q  247 aactaataatctctcaactctctatat 273  Q
    ||||||| |||| ||||||||||||||    
T  6647873 aactaatcatctttcaactctctatat 6647847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 41990044 - 41989978
Alignment:
Q  187 cctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaat 253  Q
    |||||||||  |||||| |||| ||||||||||| |||| ||||||| |||||||||||||||||||    
T  41990044 cctcatctattgtttgtttttgttaactaactttttctagatatgtggcactttatgccaaactaat 41989978  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 18476601 - 18476665
Alignment:
Q  189 tcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaat 253  Q
    |||||||  |||||| |||| |||||||||||  ||| ||||||| |||||||||||||||||||    
T  18476601 tcatctattgtttgtttttgttaactaacttttcctagatatgtggcactttatgccaaactaat 18476665  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 6645338 - 6645272
Alignment:
Q  187 cctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaat 253  Q
    |||||||||  |||||| |||| ||| |||||||  ||| ||||||| |||||||||||||||||||    
T  6645338 cctcatctattgtttgtttttgttaagtaacttttcctagatatgtggcactttatgccaaactaat 6645272  T

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Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 20133790 - 20134015
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatgnnnnnnnnnnnnngttaactatgtttttctaaagaaacttttgctnnnnn 146  Q
    ||||||||||||||||||||||||  ||||||| || |||||||| ||||             |||||||||||||||||||| |||||||||||         
T  20133790 agtgctattttctctatttatttggaaatataatcaccgatccccatatgtttttttgtttttgttaactatgtttttctaaacaaacttttgctaaaaa 20133889  T
Q  147 nntttctcattaaatttgtgtcaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgcca 246  Q
      |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  20133890 aatttctcattaaatttgtgccaccaaagaaaa-aaaaaacctcatctaacgtttgtctttggtaactaactctgtctacatctgtgccactttatgcca 20133988  T
Q  247 aactaataatctctcaactctctatat 273  Q
    ||||||| || ||||||||||||||||    
T  20133989 aactaatcatttctcaactctctatat 20134015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 24523860 - 24523931
Alignment:
Q  202 gtctttggtaactaactttgtctacatatgtgccactttatgccaaactaataatctctcaactctctatat 273  Q
    ||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||    
T  24523860 gtctttggtaactaactctgtctacatatgtgccattttatgtcaaactaatcatctcttaactctctatat 24523931  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 24523725 - 24523860
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatg--nnnnnnnnnnnnngttaactatgtttttctaaagaaacttttgctnnn 144  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||               |||||||||||||||||||| |||||||||||       
T  24523725 agtgctattttctctatttatttggcaatataaacaccgatccccatatgtttttttttgtttttgttaactatgtttttctaaacaaacttttgctaaa 24523824  T
Q  145 nnnntttctcattaaatttgtgtcaccaaagaaaag 180  Q
         ||||||||||||||||| |||||||||||||    
T  24523825 aaagattctcattaaatttgtgccaccaaagaaaag 24523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 24525755 - 24525821
Alignment:
Q  187 cctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaat 253  Q
    |||||||||  |||||| |||| ||| |||||||  ||| ||||||| |||||||||||||||||||    
T  24525755 cctcatctattgtttgtttttgttaagtaacttttcctagatatgtggcactttatgccaaactaat 24525821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 13859802 - 13859576
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatgnnnnnnnnnnnnngttaactatgtttttctaaagaaacttttgctnnnnn 146  Q
    ||||||||||||| |||||||||| |||||||||||  ||||||| |||              ||||||||||||||| |||| |||||||||||         
T  13859802 agtgctattttctatatttatttggcaatataaacactgatccccatattttttttagtttttgttaactatgtttttgtaaacaaacttttgctaaaaa 13859703  T
Q  147 nntttctcattaaatttgtgtcaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgcca 246  Q
       ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  13859702 aaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatataacgtttgtctttgataactaactctgtctatatatgtgccactttatgcca 13859603  T
Q  247 aactaataatctctcaactctctatat 273  Q
    ||||||| |||||||||||||||||||    
T  13859602 aactaatcatctctcaactctctatat 13859576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 13857056 - 13856990
Alignment:
Q  187 cctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaat 253  Q
    |||||||||  |||||| |||| ||| |||||||  ||| ||||||| |||||||||||||||||||    
T  13857056 cctcatctattgtttgtttttgttaagtaacttttcctagatatgtggcactttatgccaaactaat 13856990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 150 - 270
Target Start/End: Original strand, 11144219 - 11144339
Alignment:
Q  150 ttctcattaaatttgtgtcaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaac 249  Q
    |||||||||||||| |  ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11144219 ttctcattaaatttataccactaaagaaaagaaaaaatctcatctaacgtttgtctttggtaactaactctgtctacatatgtgccactttatgccaaac 11144318  T
Q  250 taataatctctcaactctcta 270  Q
    |||| ||||||||||||||||    
T  11144319 taatcatctctcaactctcta 11144339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 11144109 - 11144158
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatg 96  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  11144109 agtgctattttctctatttatttggcaatataaacaccgatccccatatg 11144158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 11144981 - 11145047
Alignment:
Q  187 cctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaactaat 253  Q
    |||||||||  |||||| |||| ||| |||||||  ||| ||||||| |||||||||||||||||||    
T  11144981 cctcatctattgtttgtttttgttaagtaacttttcctagatatgtggcactttatgccaaactaat 11145047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 7551472 - 7551351
Alignment:
Q  150 ttctcattaaatttgtgtcaccaaagaaaagaaaaaacctcatctaacgtttgtctttggtaactaactttgtctacatatgtgccactttatgccaaac 249  Q
    ||||||||||||||||| || ||||||||| |||| |  |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||    
T  7551472 ttctcattaaatttgtgccaacaaagaaaaaaaaata--tcatctaacgtttgtctttggtaactaactctgtctacatctgtgtcactttatgtcaaac 7551375  T
Q  250 taataatctctcaactctctatat 273  Q
     ||| |||||||||||||||||||    
T  7551374 aaatcatctctcaactctctatat 7551351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 7551578 - 7551529
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatg 96  Q
    |||| ||||||||||||||||||| |||||||| || |||||||| ||||    
T  7551578 agtgttattttctctatttatttggcaatataaccaccgatccccatatg 7551529  T

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Target: scaffold0136 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 40879 - 40950
Alignment:
Q  202 gtctttggtaactaactttgtctacatatgtgccactttatgccaaactaataatctctcaactctctatat 273  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  40879 gtctttggtaactaactttgtctacatatgtgccactttatgtcaaactaatcatctctcaactctctatat 40950  T

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Target: scaffold0136; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 40747 - 40879
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatgnnnnnnnnnnnnngttaactatgtttttctaaagaaacttttgctnnnnn 146  Q
    |||||||||||||||||||||||| ||||||||||| |||||| | |||              |||||||||||||||||||| |||||||||||         
T  40747 agtgctattttctctatttatttggcaatataaacaccgatcctcatat-tttatttttttttgttaactatgtttttctaaacaaacttttgctaaaaa 40845  T
Q  147 nntttctcattaaatttgtgtcaccaaagaaaag 180  Q
       ||||||||||||||||| |||||||||||||    
T  40846 aaattctcattaaatttgtgccaccaaagaaaag 40879  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 3993331 - 3993377
Alignment:
Q  50 gctattttctctatttatttgtcaatataaacagcgatccccgtatg 96  Q
    ||||||||||||||||||||  ||||||||||| |||||||| ||||    
T  3993331 gctattttctctatttatttagcaatataaacaccgatccccatatg 3993377  T

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Target: scaffold0416 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 4371 - 4420
Alignment:
Q  47 agtgctattttctctatttatttgtcaatataaacagcgatccccgtatg 96  Q
    |||| ||||||||||||||||||| |||||||| || |||||||| ||||    
T  4371 agtgttattttctctatttatttggcaatataaccaccgatccccatatg 4420  T

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